X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FexampleFeatures.txt;h=0bb8b7e1f08edff97a66179ca71c0a962ee19183;hb=df7802fdd54e7d3b12bda12ac55e6057c985bdf2;hp=adb1745dc7ff357c2e5064ee6fb21d14a6d9e1e8;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt index adb1745..0bb8b7e 100755 --- a/examples/exampleFeatures.txt +++ b/examples/exampleFeatures.txt @@ -24,7 +24,7 @@ BETA-BULGE 1dc451 Pfam dc206a PHOSPHORYLATION (S) b974a5 PHOSPHORYLATION (Y) 7d3881 -Cath 93b1d2 +Cath 93b1d1 ASX-TURN-IR 4ccc6e BETA-BULGE-LOOP-5 4066da CATMAT-4 4dc465 @@ -44,70 +44,70 @@ BETA-TURN-IIL 8b5b50 ST-MOTIF ac25a1 STARTGROUP uniprot -Iron-sulfur (2Fe-2S) FER_CAPAA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER_CAPAA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_CAPAA -1 3 93 Cath -Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL Fer2 Status: True Positive Pfam 55_13 FER_CAPAN -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER_CAPAN -1 45 140 Cath -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL Fer2 Status: True Positive Pfam 55_13 FER1_SOLLC -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER1_SOLLC -1 45 140 Cath Fer2 Status: True Positive Pfam 55_13 Q93XJ9_SOLTU -1 55 130 Pfam Ferredoxin_fold Status: True Positive Q93XJ9_SOLTU -1 45 140 Cath -Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER1_PEA -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_PEA -1 50 145 Cath Fer2 Status: True Positive Pfam 63_13 Q7XA98_TRIPR -1 63 138 Pfam Ferredoxin_fold Status: True Positive Q7XA98_TRIPR -1 53 148 Cath -Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL Fer2 Status: True Positive Pfam 59_13 FER1_MESCR -1 59 134 Pfam Ferredoxin_fold Status: True Positive FER1_MESCR -1 49 144 Cath -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL Fer2 Status: True Positive Pfam 58_13 FER1_SPIOL -1 58 133 Pfam Ferredoxin_fold Status: True Positive FER1_SPIOL -1 48 143 Cath -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER3_RAPSA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER3_RAPSA -1 3 93 Cath -Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER_BRANA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_BRANA -1 2 96 Cath -Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER2_ARATH -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER2_ARATH -1 50 145 Cath Fer2 Status: True Positive Pfam 60_11 Q93Z60_ARATH -1 60 118 Pfam Ferredoxin_fold Status: True Positive Q93Z60_ARATH -1 52 118 Cath -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER1_MAIZE -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_MAIZE -1 50 145 Cath Fer2 Status: True Positive Pfam 52_12 O80429_MAIZE -1 52 127 Pfam