X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FexampleFeatures.txt;h=99af214e177ba4b5364d62c0598eb114185eaa40;hb=08f7a2be3977da8704dd4751de7245bcc6fc41c3;hp=83dc4b115d230c9d06ab5af5a7b81b47693ceef3;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt index 83dc4b1..99af214 100755 --- a/examples/exampleFeatures.txt +++ b/examples/exampleFeatures.txt @@ -1,5 +1,5 @@ -ST-TURN-IIL blue|255,0,255|absolute|20.0|95.0|below|66.0 -GAMMA-TURN-CLASSIC lightGray|0,255,255|20.0|95.0|below|66.0 +ST-TURN-IIL blue +GAMMA-TURN-CLASSIC lightgray BETA-TURN-IR 9a6a94 BETA-TURN-IL d6a6ca BETA-BULGE 1dc451 @@ -24,6 +24,12 @@ BETA-TURN-IIR c79792 PHOSPHORYLATION (T) c88395 BETA-TURN-IIL 8b5b50 ST-MOTIF ac25a1 +kdHydrophobicity ccffcc|333300|-3.9|4.5|above|-2.0 + +STARTFILTERS +GAMMA-TURN-INVERSE Label Contains PDB +kdHydrophobicity (Score LT 1.5) OR (Score GE 2.8) +ENDFILTERS STARTGROUP uniprot Pfam family FER_CAPAA -1 0 0 Pfam @@ -310,3 +316,54 @@ NEST-RL FER1_MAIZE -1 124 126 NEST-RL NEST-RL FER1_MAIZE -1 241 243 NEST-RL NEST-RL FER1_MAIZE -1 292 294 NEST-RL ENDGROUP s3dm + +STARTGROUP kd +A Q93XJ9_SOLTU -1 48 48 kdHydrophobicity 1.8 +A Q93XJ9_SOLTU -1 49 49 kdHydrophobicity -0.8 +A Q93XJ9_SOLTU -1 50 50 kdHydrophobicity -1.3 +A Q93XJ9_SOLTU -1 51 51 kdHydrophobicity -3.9 +A Q93XJ9_SOLTU -1 52 52 kdHydrophobicity 4.2 +A Q93XJ9_SOLTU -1 53 53 kdHydrophobicity -3.9 +A Q93XJ9_SOLTU -1 54 54 kdHydrophobicity 3.8 +A Q93XJ9_SOLTU -1 55 55 kdHydrophobicity 4.5 +A Q93XJ9_SOLTU -1 56 56 kdHydrophobicity -0.7 +A Q93XJ9_SOLTU -1 57 57 kdHydrophobicity -1.6 +A Q93XJ9_SOLTU -1 58 58 kdHydrophobicity -3.5 +A Q93XJ9_SOLTU -1 59 59 kdHydrophobicity -0.4 +A Q93XJ9_SOLTU -1 60 60 kdHydrophobicity -1.6 +A Q93XJ9_SOLTU -1 61 61 kdHydrophobicity 4.5 +A Q93XJ9_SOLTU -1 62 62 kdHydrophobicity -3.5 +A Q93XJ9_SOLTU -1 63 63 kdHydrophobicity 2.8 +A FER1_SPIOL -1 51 51 kdHydrophobicity 1.8 +A FER1_SPIOL -1 52 52 kdHydrophobicity 1.8 +A FER1_SPIOL -1 53 53 kdHydrophobicity -1.3 +A FER1_SPIOL -1 54 54 kdHydrophobicity -3.9 +A FER1_SPIOL -1 55 55 kdHydrophobicity 4.2 +A FER1_SPIOL -1 56 56 kdHydrophobicity -0.7 +A FER1_SPIOL -1 57 57 kdHydrophobicity 3.8 +A FER1_SPIOL -1 58 58 kdHydrophobicity 4.2 +A FER1_SPIOL -1 59 59 kdHydrophobicity -0.7 +A FER1_SPIOL -1 60 60 kdHydrophobicity -1.6 +A FER1_SPIOL -1 61 61 kdHydrophobicity -0.7 +A FER1_SPIOL -1 62 62 kdHydrophobicity -0.4 +A FER1_SPIOL -1 63 63 kdHydrophobicity -3.5 +A FER1_SPIOL -1 64 64 kdHydrophobicity 4.2 +A FER1_SPIOL -1 65 65 kdHydrophobicity -3.5 +A FER1_SPIOL -1 66 66 kdHydrophobicity 2.8 +C FER1_MAIZE -1 53 53 kdHydrophobicity 1.8 +C FER1_MAIZE -1 54 54 kdHydrophobicity -0.7 +C FER1_MAIZE -1 55 55 kdHydrophobicity -1.3 +C FER1_MAIZE -1 56 56 kdHydrophobicity -3.5 +C FER1_MAIZE -1 57 57 kdHydrophobicity 4.2 +C FER1_MAIZE -1 58 58 kdHydrophobicity -3.9 +C FER1_MAIZE -1 59 59 kdHydrophobicity 3.8 +C FER1_MAIZE -1 60 60 kdHydrophobicity 4.5 +C FER1_MAIZE -1 61 61 kdHydrophobicity -0.7 +C FER1_MAIZE -1 62 62 kdHydrophobicity -1.6 +C FER1_MAIZE -1 63 63 kdHydrophobicity -3.5 +C FER1_MAIZE -1 64 64 kdHydrophobicity -0.4 +C FER1_MAIZE -1 65 65 kdHydrophobicity -3.5 +C FER1_MAIZE -1 66 66 kdHydrophobicity 4.2 +C FER1_MAIZE -1 67 67 kdHydrophobicity -3.5 +C FER1_MAIZE -1 68 68 kdHydrophobicity 3.8 +ENDGROUP kd