X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FexampleFeatures.txt;h=c0098a939a2fdaea7ea9393523cb905ce672bed1;hb=9472f2f66bbcbc7d875251804d4c926f63828a87;hp=dfadb5027ede675d26cfb91770f824b0c6aae161;hpb=26ba864a6c290121fe6cf616794d2d0bea65fb7d;p=jalview.git diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt index dfadb50..c0098a9 100755 --- a/examples/exampleFeatures.txt +++ b/examples/exampleFeatures.txt @@ -1,5 +1,5 @@ ST-TURN-IIL blue|255,0,255|absolute|20.0|95.0|below|66.0 -GAMMA-TURN-CLASSIC red|0,255,255|20.0|95.0|below|66.0 +GAMMA-TURN-CLASSIC red|0,255,255|20.0|95.0|below|66.0 BETA-TURN-IR 9a6a94 BETA-TURN-IL d6a6ca BETA-BULGE 1dc451 @@ -26,73 +26,74 @@ BETA-TURN-IIL 8b5b50 ST-MOTIF ac25a1 STARTGROUP uniprot +Pfam family FER_CAPAA -1 0 0 Pfam Iron-sulfur (2Fe-2S) FER_CAPAA -1 39 39 METAL Iron-sulfur (2Fe-2S) FER_CAPAA -1 44 44 METAL Iron-sulfur (2Fe-2S) FER_CAPAA -1 47 47 METAL Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL -Fer2 Status: True Positive Pfam 8_8 FER_CAPAA -1 8 83 Pfam +Fer2 Status: True Positive Pfam 8_8 FER_CAPAA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_CAPAA -1 3 93 Cath Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL -Fer2 Status: True Positive Pfam 55_13 FER_CAPAN -1 55 130 Pfam +Fer2 Status: True Positive Pfam 55_13 FER_CAPAN -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER_CAPAN -1 45 140 Cath Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL -Fer2 Status: True Positive Pfam 55_13 FER1_SOLLC -1 55 130 Pfam +Fer2 Status: True Positive Pfam 55_13 FER1_SOLLC -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER1_SOLLC -1 45 140 Cath -Fer2 Status: True Positive Pfam 55_13 Q93XJ9_SOLTU -1 55 130 Pfam +Fer2 Status: True Positive Pfam 55_13 Q93XJ9_SOLTU -1 55 130 Pfam Ferredoxin_fold Status: True Positive Q93XJ9_SOLTU -1 45 140 Cath Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL -Fer2 Status: True Positive Pfam 60_13 FER1_PEA -1 60 135 Pfam +Fer2 Status: True Positive Pfam 60_13 FER1_PEA -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_PEA -1 50 145 Cath -Fer2 Status: True Positive Pfam 63_13 Q7XA98_TRIPR -1 63 138 Pfam +Fer2 Status: True Positive Pfam 63_13 Q7XA98_TRIPR -1 63 138 Pfam Ferredoxin_fold Status: True Positive Q7XA98_TRIPR -1 53 148 Cath Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL -Fer2 Status: True Positive Pfam 59_13 FER1_MESCR -1 59 134 Pfam +Fer2 Status: True Positive Pfam 59_13 FER1_MESCR -1 59 134 Pfam Ferredoxin_fold Status: True Positive FER1_MESCR -1 49 144 Cath Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL -Fer2 Status: True Positive Pfam 58_13 FER1_SPIOL -1 58 133 Pfam +Fer2 Status: True Positive Pfam 58_13 FER1_SPIOL -1 58 133 Pfam Ferredoxin_fold Status: True Positive FER1_SPIOL -1 48 143 Cath Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL -Fer2 Status: True Positive Pfam 8_8 FER3_RAPSA -1 8 83 Pfam +Fer2 Status: True Positive Pfam 8_8 FER3_RAPSA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER3_RAPSA -1 3 93 Cath Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL -Fer2 Status: True Positive Pfam 8_8 FER_BRANA -1 8 83 Pfam +Fer2 Status: True Positive Pfam 8_8 FER_BRANA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_BRANA -1 2 96 Cath Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL -Fer2 Status: True Positive Pfam 60_13 FER2_ARATH -1 60 135 Pfam +Fer2 Status: True Positive Pfam 60_13 FER2_ARATH -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER2_ARATH -1 50 145 Cath -Fer2 Status: True Positive Pfam 60_11 Q93Z60_ARATH -1 60 118 Pfam +Fer2 Status: True Positive Pfam 60_11 Q93Z60_ARATH -1 60 118 Pfam Ferredoxin_fold Status: True Positive Q93Z60_ARATH -1 52 118 Cath Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL -Fer2 Status: True Positive Pfam 60_13 FER1_MAIZE -1 60 135 Pfam +Fer2 Status: True Positive Pfam 60_13 FER1_MAIZE -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_MAIZE -1 50 145 Cath -Fer2 Status: True Positive Pfam 52_12 O80429_MAIZE -1 52 127 Pfam +Fer2 Status: True Positive Pfam 52_12 O80429_MAIZE -1 52 127 Pfam Ferredoxin_fold Status: True Positive O80429_MAIZE -1 42 137 Cath ENDGROUP uniprot