X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2FPIDmatrix.groovy;h=b97abcc664d54a6ff6c3c5165132cd6a7b0f2823;hb=9fe82acb01cd20f4efe019dc61f1b5a2dcce594b;hp=3ff4b3928d8555d36a143bc8cec327a9805eae25;hpb=1bb5184297b3c8ed376845412511c7c8d7ebe1d7;p=jalview.git

diff --git a/examples/groovy/PIDmatrix.groovy b/examples/groovy/PIDmatrix.groovy
index 3ff4b39..b97abcc 100644
--- a/examples/groovy/PIDmatrix.groovy
+++ b/examples/groovy/PIDmatrix.groovy
@@ -62,7 +62,7 @@ void printSimilarityMatrix(boolean selview=false, boolean includeids=true, Simil
 
   jalview.datamodel.AlignmentView seqStrings = av.getAlignmentView(selview)
 
-  if (!selview) {
+  if (!selview || av.getSelectionGroup()==null) {
     start = 0
     end = av.getAlignment().getWidth()
     seqs = av.getAlignment().getSequencesArray()
@@ -96,4 +96,4 @@ void printSimilarityMatrix(boolean selview=false, boolean includeids=true, Simil
 
     print "\n"
   }
-}
+}
\ No newline at end of file