X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2FcolourSchemes.groovy;fp=examples%2Fgroovy%2FcolourSchemes.groovy;h=27e179b39235203296e639878cdd0fb2707d0c27;hb=8e1be43e250107a4d86898bd554cf03098fa5957;hp=84eabbfa299ee81e59d111b8480b99843140567e;hpb=8b55eedb9d76a8c65b80f756c4412bf029906bf7;p=jalview.git

diff --git a/examples/groovy/colourSchemes.groovy b/examples/groovy/colourSchemes.groovy
index 84eabbf..27e179b 100644
--- a/examples/groovy/colourSchemes.groovy
+++ b/examples/groovy/colourSchemes.groovy
@@ -2,7 +2,6 @@ import java.awt.Color;
 import jalview.schemes.ResidueColourScheme;
 import jalview.schemes.ColourSchemes;
 import jalview.datamodel.AnnotatedCollectionI;
-import java.util.Map;
 import jalview.datamodel.SequenceI;
 
 /*
@@ -17,13 +16,8 @@ class Stripy extends ResidueColourScheme {
     Stripy() { }
     String getSchemeName() { "stripy" }
     Stripy getInstance(AnnotatedCollectionI coll, Map map) { new Stripy() }
-    Color findColour(char res, int col, SequenceI seq) {
-      // determine the colour
-      Color colour = findColour(res, col)
-      // let Jalview apply conservation or consensus shading
-      adjustColour(res, col, colour);
-    }
-    Color findColour(char res, int col) {
+    Color findColour(char res, int col, SequenceI seq) 
+    {
         if (res == ' ' || res == '-' || res == '.') 
         {
             Color.yellow
@@ -48,17 +42,13 @@ class ByWeight extends ResidueColourScheme {
     boolean isPeptideSpecific() {true}
     String getSchemeName() { "By Weight" }
     ByWeight getInstance(AnnotatedCollectionI coll, Map map) { new ByWeight() }
-    Color makeColour(int weight) {
+    Color makeColour(int weight) 
+    {
       int i = 255 * (weight - min) / (max - min);
       new Color(i, 0, i);
     }
-    Color findColour(char res, int col, SequenceI seq) {
-      // determine the colour
-      Color colour = findColour(res, col)
-      // let Jalview apply any conservation or consensus shading
-      adjustColour(res, col, colour);
-    }
-    Color findColour(char res, int col) {
+    Color findColour(char res, int col, SequenceI seq) 
+    {
         switch (res) {
           case ' ':
           case '-':