X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2Fprinttitle.groovy;h=a048d6504ef0cf3118edbb09ebc1d7af3e5d42b0;hb=HEAD;hp=0d462f1e19fd39b850599b2c6b2fcdad54fd59f1;hpb=89cb45bd28a34f30e807efe12552268e3b5628b8;p=jalview.git diff --git a/examples/groovy/printtitle.groovy b/examples/groovy/printtitle.groovy index 0d462f1..a048d65 100644 --- a/examples/groovy/printtitle.groovy +++ b/examples/groovy/printtitle.groovy @@ -1,12 +1,35 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ // do something groovy in jalview -print "Hello World.\n"; -def alf = Jalview.getAlignFrames(); +println "Hello World.\n" +println "First sequence is " + Jalview.getCurrentAlignFrame().viewport.alignment.getSequenceAt(0).getDisplayId(true) + +def alf = Jalview.getAlignFrames() for (ala in alf) { - // ala is an jalview.gui.AlignFrame object - print ala.getTitle()+"\n"; + // ala is an jalview.gui.AlignFrame object + println ala.getTitle() // get the parent jalview.datamodel.Alignment from the alignment viewport - def alignment = ala.viewport.alignment; + def alignment = ala.viewport.alignment // get the first sequence from the jalview.datamodel.Alignment object - def seq = alignment.getSequenceAt(0); + def seq = alignment.getSequenceAt(0) } +Jalview.quit()