X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2Fprinttitle.groovy;h=b3387ea4290de48c7eb6cf0e58d7d34fc2f45e84;hb=0ac97c219bf88278f77306a5695e8bd9d9ca9179;hp=8fe91db7f8fe98dafb0e7628116aee04c2d41014;hpb=1a6d20b15b2ba810bc807f76eb44ab1b9cc4482a;p=jalview.git diff --git a/examples/groovy/printtitle.groovy b/examples/groovy/printtitle.groovy index 8fe91db..b3387ea 100644 --- a/examples/groovy/printtitle.groovy +++ b/examples/groovy/printtitle.groovy @@ -1,12 +1,35 @@ -// do something groovy in jalview -print "Hello World.\n"; -def alf = Jalview.getAlignframes(); -for (ala in alf) -{ - // ala is an jalview.gui.AlignFrame object - print ala.getTitle()+"\n"; - // get the parent jalview.datamodel.Alignment from the alignment viewport - def alignment = ala.viewport.alignment; - // get the first sequence from the jalview.datamodel.Alignment object - def seq = alignment.getSequenceAt(0); -} +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ +// do something groovy in jalview +println "Hello World.\n" +println "First sequence is " + currentAlFrame.viewport.alignment.getSequenceAt(0).getDisplayId(true) + +def alf = Jalview.getAlignFrames() +for (ala in alf) +{ + // ala is an jalview.gui.AlignFrame object + println ala.getTitle() + // get the parent jalview.datamodel.Alignment from the alignment viewport + def alignment = ala.viewport.alignment + // get the first sequence from the jalview.datamodel.Alignment object + def seq = alignment.getSequenceAt(0) +} +Jalview.quit()