X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fjavascript%2Fjalview.js;h=6a7133e66d0bf204013f42dc768d6d3299d5ea1b;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=fa38582663c51e712063b6475f0bf1d306d14a99;hpb=2637b8d6956c7d089ead447b8183342869879d5f;p=jalview.git

diff --git a/examples/javascript/jalview.js b/examples/javascript/jalview.js
index fa38582..6a7133e 100644
--- a/examples/javascript/jalview.js
+++ b/examples/javascript/jalview.js
@@ -1,6 +1,6 @@
 /**
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -153,7 +153,7 @@ function linkJvJmol(applet, jmolView, modeltofiles) {
 		var sep = applet.getSeparator();
 		var oldjm=jmolView;
 		// recover full id of Jmol applet
-		jmolView=_jmolGetApplet(jmolView).id;
+		jmolView=jmolFindTarget(jmolView)._id; // Jmol 14.2.14
 		var jmbinding=_jvjmols.get(jmolView);
 		if (!jmbinding)
 		{	
@@ -318,10 +318,8 @@ function _jmolhover(jmid, atomlabel, atomidx) {
 	}
 	// use atomlabel[5] to look up model filename so we can highlight associated positions in any jalviews
 	for (ap in _jvapps) {
-		_jvapps[ap].mouseOverStructure(atomlabel[2], atomlabel[3],
-				getDocumentBase()
-						+ "/" + 
-						modeltofiles[atomlabel[5]]);
+		pdb = getDocumentBase() + modeltofiles[atomlabel[5]];
+		_jvapps[ap].mouseOverStructure(atomlabel[2], atomlabel[3], pdb);
 		msg = _jmolhovermsg;
 	}
 }