X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftest_fab41.result%2Fargfile.txt;fp=examples%2Ftest_fab41.result%2Fargfile.txt;h=52d68eec1fc1a994bb6975fa48f962f38dbd0a5b;hb=c8d80485038ab96fb06bd0885c323803646d8e57;hp=0000000000000000000000000000000000000000;hpb=1b1f995b3eb83dc3496510bfc2278f1f72fcfd8a;p=jalview.git

diff --git a/examples/test_fab41.result/argfile.txt b/examples/test_fab41.result/argfile.txt
new file mode 100644
index 0000000..52d68ee
--- /dev/null
+++ b/examples/test_fab41.result/argfile.txt
@@ -0,0 +1,24 @@
+--debug
+--nonews
+--nosplash
+--noannotation
+--substitutions
+--open={argfiledirname}/sample.a2m
+--colour=gecos:flower
+--structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
+--tempfac=plddt
+--structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
+--tempfac=plddt
+--paematrix={dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
+--image={dirname}/{basename}.html
+#--headless