X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftest_fab41.result%2Fargfile.txt;h=50e898e1b504aa4e8350a63487fd8fbbcba7d0a9;hb=5a22578728a3274595187e2319dedbe4ea3c231b;hp=a3540cf5245cd87e64d9475c8b00efc916f5d591;hpb=58827f5ad6ff27d76c20c1aba96cd3b4a200a691;p=jalview.git

diff --git a/examples/test_fab41.result/argfile.txt b/examples/test_fab41.result/argfile.txt
index a3540cf..50e898e 100644
--- a/examples/test_fab41.result/argfile.txt
+++ b/examples/test_fab41.result/argfile.txt
@@ -1,16 +1,18 @@
+--debug
 --nonews
 --nosplash
 --substitutions
 --open={argfiledirname}/sample.a2m
 --colour=gecos:flower
 --structure={dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix="[label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json"
+--paematrix=[seqid=101;label=PAE R1-M3]{dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json
 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix="[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json"
+--paematrix=[label=PAE R2-M4]{dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json
 --structure={dirname}/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix="[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json"
+--paematrix=[label=PAE R3-M2]{dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
 --structure={dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix="[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json"
+--paematrix=[label=PAE R4-M5]{dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix="[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json"
+--paematrix=[label=PAE R5-M1]{dirname}/test_fab41_unrelaxed_rank_5_model_1_scores.json
 --image={dirname}/{basename}.html
+#--headless