X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2F4IM2_nterm.pdb;fp=examples%2Ftestdata%2F4IM2_nterm.pdb;h=48f7803f31aba5abf48729d4c1e38cb512bd40be;hb=3699e0fd64de573799a6cd2fd78da5dfc670d98e;hp=0000000000000000000000000000000000000000;hpb=af14381c1d151fbc755528c29bb6530b44c9e191;p=jalview.git diff --git a/examples/testdata/4IM2_nterm.pdb b/examples/testdata/4IM2_nterm.pdb new file mode 100644 index 0000000..48f7803 --- /dev/null +++ b/examples/testdata/4IM2_nterm.pdb @@ -0,0 +1,139 @@ +HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-JAN-13 4IM2 +TITLE STRUCTURE OF TANK-BINDING KINASE 1 (Truncated test file) +DBREF 4IM2 A 1 657 UNP Q9UHD2 TBK1_HUMAN 1 657 +SEQADV 4IM2 GLY A -5 UNP Q9UHD2 EXPRESSION TAG +SEQADV 4IM2 SER A -4 UNP Q9UHD2 EXPRESSION TAG +SEQADV 4IM2 GLY A -3 UNP Q9UHD2 EXPRESSION TAG +SEQADV 4IM2 SER A -2 UNP Q9UHD2 EXPRESSION TAG +SEQADV 4IM2 GLY A -1 UNP Q9UHD2 EXPRESSION TAG +SEQADV 4IM2 SER A 0 UNP Q9UHD2 EXPRESSION TAG +SEQRES 1 A 663 GLY SER GLY SER GLY SER MET GLN SER THR SER ASN HIS +ATOM 1 N GLY A -1 126.784 4.226 -23.353 1.00158.13 N +ANISOU 1 N GLY A -1 19370 17517 23197 6628 1162 2075 N +ATOM 2 CA GLY A -1 125.521 4.306 -24.062 1.00150.94 C +ANISOU 2 CA GLY A -1 18746 16231 22374 6153 1277 1996 C +ATOM 3 C GLY A -1 125.742 4.361 -25.557 1.00146.29 C +ANISOU 3 C GLY A -1 18187 15453 21943 5900 1405 1498 C +ATOM 4 O GLY A -1 126.691 4.980 -26.029 1.00150.85 O +ANISOU 4 O GLY A -1 18536 16366 22413 5906 1385 1160 O +ATOM 5 N SER A 0 124.869 3.710 -26.313 1.00137.36 N +ANISOU 5 N SER A 0 17328 13796 21068 5675 1550 1432 N +ATOM 6 CA SER A 0 125.052 3.672 -27.755 1.00139.44 C +ANISOU 6 CA SER A 0 17634 13884 21461 5464 1674 953 C +ATOM 7 C SER A 0 123.846 4.104 -28.574 1.00137.43 C +ANISOU 7 C SER A 0 17591 13478 21149 4975 1714 755 C +ATOM 8 O SER A 0 122.737 4.275 -28.071 1.00128.25 O +ANISOU 8 O SER A 0 16566 12244 19921 4780 1667 988 O +ATOM 9 CB SER A 0 125.578 2.312 -28.214 1.00155.09 C +ANISOU 9 CB SER A 0 19671 15395 23862 5752 1827 887 C +ATOM 10 OG SER A 0 126.993 2.281 -28.131 1.00164.59 O +ANISOU 10 OG SER A 0 20608 16866 25062 6113 1802 781 O +ATOM 11 N MET A 1 124.096 4.270 -29.861 1.00134.87 N +ANISOU 11 N MET A 1 17283 13123 20839 4799 1805 311 N +ATOM 12 CA MET A 1 123.214 5.039 -30.698 1.00125.22 C +ANISOU 12 CA MET A 1 16193 11958 19428 4369 1804 70 C +ATOM 13 C MET A 1 122.885 4.351 -32.006 1.00124.69 C +ANISOU 13 C MET A 1 16293 11510 19572 4225 1942 -293 C +ATOM 14 O MET A 1 123.723 3.686 -32.606 1.00129.61 O +ANISOU 14 O MET A 1 16868 11984 20394 4414 2057 -519 O +ATOM 15 CB MET A 1 123.867 6.392 -30.970 1.00122.51 C +ANISOU 15 CB MET A 1 15675 12140 18732 4254 1762 -132 C +ATOM 16 CG MET A 1 125.074 6.368 -31.866 1.00120.74 C +ANISOU 16 CG MET A 1 15318 12013 18544 4369 1884 -495 C +ATOM 17 SD MET A 1 125.834 7.982 -31.850 1.00196.33 S +ANISOU 17 SD MET A 1 24655 22193 27747 4246 1861 -642 S +ATOM 18 CE MET A 1 126.785 7.896 -30.345 1.00132.53 C +ANISOU 18 CE MET A 1 16264 14397 19693 4639 1728 -355 C +ATOM 19 N GLN A 2 121.643 4.496 -32.440 1.00123.78 N +ANISOU 19 N GLN A 2 16363 11253 19416 3898 1925 -369 N +ATOM 20 CA GLN A 2 121.313 4.161 -33.809 1.00128.51 C +ANISOU 20 CA GLN A 2 17093 11643 20094 3714 2020 -799 C +ATOM 21 C GLN A 2 121.639 5.396 -34.617 1.00121.06 C +ANISOU 21 C GLN A 2 16105 11138 18752 3541 2004 -1065 C +ATOM 22 O GLN A 2 121.959 6.442 -34.059 1.00107.32 O +ANISOU 22 O GLN A 2 14247 9790 16739 3528 1928 -906 O +ATOM 23 CB GLN A 2 119.832 3.845 -33.965 1.00136.11 C +ANISOU 23 CB GLN A 2 18240 12314 21161 3439 1994 -809 C +ATOM 24 CG GLN A 2 119.171 3.277 -32.740 1.00148.45 C +ANISOU 24 CG GLN A 2 19841 13613 22949 3500 1973 -376 C +ATOM 25 CD GLN A 2 117.773 2.799 -33.042 1.00158.28 C +ANISOU 25 CD GLN A 2 21243 14511 24385 3221 1993 -473 C +ATOM 26 OE1 GLN A 2 116.827 3.097 -32.313 1.00163.28 O +ANISOU 26 OE1 GLN A 2 21915 15160 24966 3070 1921 -211 O +ATOM 27 NE2 GLN A 2 117.631 2.057 -34.134 1.00155.02 N +ANISOU 27 NE2 GLN A 2 20902 13797 24200 3144 2095 -885 N +ATOM 28 N SER A 3 121.547 5.280 -35.931 1.00124.66 N +ANISOU 28 N SER A 3 16661 11530 19175 3410 2090 -1474 N +ATOM 29 CA SER A 3 121.742 6.432 -36.781 1.00120.35 C +ANISOU 29 CA SER A 3 16121 11369 18236 3242 2107 -1703 C +ATOM 30 C SER A 3 121.190 6.186 -38.161 1.00125.27 C +ANISOU 30 C SER A 3 16914 11882 18801 3073 2165 -2108 C +ATOM 31 O SER A 3 120.746 5.090 -38.489 1.00135.86 O +ANISOU 31 O SER A 3 18337 12848 20436 3082 2197 -2268 O +ATOM 32 CB SER A 3 123.217 6.751 -36.923 1.00116.70 C +ANISOU 32 CB SER A 3 15475 11153 17711 3435 2220 -1807 C +ATOM 33 OG SER A 3 123.770 5.974 -37.974 1.00112.78 O +ANISOU 33 OG SER A 3 15005 10478 17367 3528 2375 -2175 O +ATOM 34 N THR A 4 121.244 7.232 -38.972 1.00116.48 N +ANISOU 34 N THR A 4 15849 11109 17301 2928 2191 -2281 N +ATOM 35 CA THR A 4 120.978 7.130 -40.394 1.00113.12 C +ANISOU 35 CA THR A 4 15568 10691 16723 2823 2262 -2692 C +ATOM 36 C THR A 4 122.118 7.839 -41.119 1.00116.32 C +ANISOU 36 C THR A 4 15918 11410 16867 2884 2432 -2867 C +ATOM 37 O THR A 4 123.106 8.236 -40.495 1.00117.17 O +ANISOU 37 O THR A 4 15851 11671 16998 3007 2493 -2706 O +ATOM 38 CB THR A 4 119.615 7.756 -40.775 1.00106.20 C +ANISOU 38 CB THR A 4 14854 9927 15568 2568 2121 -2713 C +ATOM 39 OG1 THR A 4 119.774 9.154 -41.043 1.00107.14 O +ANISOU 39 OG1 THR A 4 15001 10451 15258 2480 2138 -2644 O +ATOM 40 CG2 THR A 4 118.597 7.567 -39.657 1.00 99.42 C +ANISOU 40 CG2 THR A 4 13990 8889 14896 2483 1956 -2396 C +ATOM 41 N SER A 5 121.981 7.982 -42.432 1.00116.70 N +ANISOU 41 N SER A 5 16106 11564 16670 2803 2517 -3210 N +ATOM 42 CA SER A 5 122.975 8.671 -43.247 1.00122.60 C +ANISOU 42 CA SER A 5 16837 12604 17144 2839 2721 -3385 C +ATOM 43 C SER A 5 123.317 10.064 -42.713 1.00128.43 C +ANISOU 43 C SER A 5 17501 13666 17630 2768 2748 -3105 C +ATOM 44 O SER A 5 124.481 10.467 -42.712 1.00133.01 O +ANISOU 44 O SER A 5 17934 14410 18193 2852 2925 -3133 O +ATOM 45 CB SER A 5 122.473 8.779 -44.687 1.00127.34 C +ANISOU 45 CB SER A 5 17646 13318 17418 2741 2774 -3729 C +ATOM 46 OG SER A 5 121.108 9.163 -44.712 1.00135.31 O +ANISOU 46 OG SER A 5 18807 14370 18235 2568 2576 -3643 O +ATOM 47 N ASN A 6 122.303 10.783 -42.240 1.00122.78 N +ANISOU 47 N ASN A 6 16868 13033 16750 2608 2581 -2859 N +ATOM 48 CA ASN A 6 122.460 12.194 -41.897 1.00114.44 C +ANISOU 48 CA ASN A 6 15777 12275 15429 2507 2620 -2639 C +ATOM 49 C ASN A 6 122.348 12.537 -40.412 1.00108.55 C +ANISOU 49 C ASN A 6 14870 11544 14832 2498 2474 -2282 C +ATOM 50 O ASN A 6 122.712 13.640 -40.004 1.00110.16 O +ANISOU 50 O ASN A 6 14983 11984 14890 2435 2531 -2135 O +ATOM 51 CB ASN A 6 121.461 13.034 -42.695 1.00113.00 C +ANISOU 51 CB ASN A 6 15832 12254 14850 2339 2583 -2658 C +ATOM 52 CG ASN A 6 121.646 12.886 -44.191 1.00118.14 C +ANISOU 52 CG ASN A 6 16648 12982 15257 2366 2743 -2999 C +ATOM 53 OD1 ASN A 6 122.765 12.952 -44.698 1.00122.16 O +ANISOU 53 OD1 ASN A 6 17097 13580 15737 2449 2985 -3154 O +ATOM 54 ND2 ASN A 6 120.546 12.672 -44.905 1.00118.96 N +ANISOU 54 ND2 ASN A 6 16946 13074 15179 2302 2609 -3139 N +ATOM 55 N HIS A 7 121.845 11.605 -39.608 1.00100.48 N +ANISOU 55 N HIS A 7 13810 10269 14098 2560 2305 -2149 N +ATOM 56 CA HIS A 7 121.657 11.871 -38.183 1.00 91.49 C +ANISOU 56 CA HIS A 7 12535 9160 13066 2569 2162 -1799 C +ATOM 57 C HIS A 7 122.134 10.725 -37.300 1.00 97.74 C +ANISOU 57 C HIS A 7 13180 9725 14232 2793 2117 -1685 C +ATOM 58 O HIS A 7 122.456 9.647 -37.791 1.00101.23 O +ANISOU 58 O HIS A 7 13643 9923 14898 2924 2188 -1876 O +ATOM 59 CB HIS A 7 120.189 12.175 -37.884 1.00 86.30 C +ANISOU 59 CB HIS A 7 12021 8464 12306 2383 1977 -1628 C +ATOM 60 CG HIS A 7 119.634 13.303 -38.694 1.00101.46 C +ANISOU 60 CG HIS A 7 14094 10603 13853 2201 2000 -1699 C +ATOM 61 ND1 HIS A 7 119.265 13.157 -40.015 1.00 99.83 N +ANISOU 61 ND1 HIS A 7 14076 10384 13472 2153 2049 -1976 N +ATOM 62 CD2 HIS A 7 119.401 14.600 -38.379 1.00 89.60 C +ANISOU 62 CD2 HIS A 7 12588 9342 12114 2078 1988 -1527 C +ATOM 63 CE1 HIS A 7 118.823 14.314 -40.476 1.00 97.86 C +ANISOU 63 CE1 HIS A 7 13944 10363 12875 2029 2062 -1939 C +ATOM 64 NE2 HIS A 7 118.896 15.206 -39.503 1.00 93.14 N +ANISOU 64 NE2 HIS A 7 13235 9899 12253 1975 2035 -1667 N +END