X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fexonerateoutput.gff;h=d3b5f9bf2a6cbfecd3a81013b4566e8fd9621e95;hb=01e95ae1be5ae83392de930dea48c531e2afa339;hp=bf3349f6306ca808576b7d7a7dac3ef13dbe1b30;hpb=26ba864a6c290121fe6cf616794d2d0bea65fb7d;p=jalview.git

diff --git a/examples/testdata/exonerateoutput.gff b/examples/testdata/exonerateoutput.gff
index bf3349f..d3b5f9b 100644
--- a/examples/testdata/exonerateoutput.gff
+++ b/examples/testdata/exonerateoutput.gff
@@ -13,6 +13,7 @@
 contig_1146	exonerate:protein2genome:local	gene	8534	11269	3652	-	.	gene_id 0 ; sequence DDB_G0269124 ; gene_orientation .
 contig_1146	exonerate:protein2genome:local	cds	8534	11269	.	-	.	
 contig_1146	exonerate:protein2genome:local	exon	8534	11269	.	-	.	insertions 3 ; deletions 6
+#TODO need to understand why GFF features is from 11269 but Align is from 11270
 contig_1146	exonerate:protein2genome:local	similarity	8534	11269	3652	-	.	alignment_id 0 ; Query DDB_G0269124 ; Align 11270 143 120 ; Align 11150 187 282 ; Align 10865 281 888 ; Align 9977 578 1068 ; Align 8909 935 375
 # and a made-up alignment to a sequence in exonerateseqs.fa
 contig_1146	exonerate:protein2genome:local	similarity	8534	11269	3652	-	.	alignment_id 0 ; Query DDB_G0280897 ; Align 11270 143 120