Phyre 2 alignment of FER_CAPAN_1-144 with c1x31A

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1x31A_.80.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1x31A_.80.alig.html;h=24073ee0f39d63ae7408e07fb1e15cc9549b235e;hb=207b06de28859536277608ad94897eaa526b1279;hp=0000000000000000000000000000000000000000;hpb=8537d486848be3e97578248dae6bede12e343fe1;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1x31A_.80.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1x31A_.80.alig.html new file mode 100644 index 0000000..24073ee --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1x31A_.80.alig.html @@ -0,0 +1,234 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1x31A_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 53.62% Date Wed Jan 4 12:02:18 GMT 2017
Rank 80 Aligned Residues 46
% Identity 9% Template c1x31A_
PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; +PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 +
Resolution 2.15 Å
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

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	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.											.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.			.	.	.	.	.	.	.	.	.	.
Query Sequence	K	V	K	L	I	T	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	.	Y	S	.	.	.	.	.	.	.	.	.	.	C	R	A	G	S	C	S	S	C	A	G	K	I
Query Conservation																																		.			.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																								.			.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.
Template Sequence	A	L	T	L	T	V	D	G	.	.	Q	Q	L	S	A	F	R	G	D	T	V	A	S	A	M	L	A	N	G	L	R	S	C	G	N	S	M	Y	L	D	R	P	R	G	I	F	S	A	G	V	E	E	P	N	A	L	I	T	V
Template Known Secondary structure							T	T	.	.								T		B								T	T			B		S			T	T	T					B				S	S	T	T		S	S
Template Predicted Secondary structure									.	.
Template SS confidence
	21	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.