X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2mjdA_.29.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2mjdA_.29.alig.txt;h=a39800334fd9129ac0094ac1b13f80ba8ceced6c;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mjdA_.29.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mjdA_.29.alig.txt
new file mode 100644
index 0000000..a398003
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mjdA_.29.alig.txt
@@ -0,0 +1,26 @@
+29 c2mjdA_ Probab=99.67   E-value=2.3e-16  Score=114.42  Aligned_columns=96  Identities=25%
+
+Q ss_pred             CEEEEEEEECCC-EEEEEECCCCCHHHHHHHCCCCCEECCC-CCCCCCCCEEEECCCCCC
+Q ss_conf             408999992697-2999967998289999987897000233-785876717994142115
+Q FER_CAPAN_1-14   48 ASYKVKLITPDG-PIEFDCPDNVYILDQAEEAGHDLPYSCR-AGSCSSCAGKIAGGAVDQ  105 (144)
+Q Consensus        48 ~~~~V~~~~~~g-~~~~~~~~~~tiLdaa~~aGi~l~~sCr-~G~CgtC~~~v~~G~v~~  105 (144)
+                      ...+|+|+.++| .++|++++|++||++++++|++|+++|+ .|.||+|+++|.+|.++.
+T Consensus         2 ~~~kIt~i~~~G~~~~i~~~~G~tLl~a~~~~gi~i~~~CgG~g~CgtC~v~v~~~~~~~   61 (115)
+T c2mjdA_           2 EELKITFILKDGSQKTYEVCEGETILDIAQGHNLDMEGACGGSCACSTCHVIVDPDYYDA   61 (115)
+T ss_dssp             CCEEEEEECTTSCEEEEEECTTCCHHHHHHHHTCSCCCSSTTSSSSCCCEEEECTTTSTT
+T ss_pred             CEEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCC
+T ss_conf             649999983999889999479986789999739997322687632145379980456236
+
+
+Q ss_pred             CCCCCCCH-------HHHCCCEEEEEEEEECCC---EEEEECCHHHHC
+Q ss_conf             66666897-------683497599643245067---699924845406
+Q FER_CAPAN_1-14  106 TDGNFLDD-------DQLEEGWVLTCVAYPQSD---VTIETHKEAELV  143 (144)
+Q Consensus       106 ~~~~~l~~-------~~~~~g~vL~C~s~p~sD---v~Ie~~~e~el~  143 (144)
+                      -......+       ++..+|++|+||+++.+|   ++|++|+..+.+
+T Consensus        62 l~~~~~~E~~~L~~~~~~~~~~RLaCQ~~v~~dldgi~V~iP~~~r~~  109 (115)
+T c2mjdA_          62 LPEPEDDENDMLDLAYGLTETSRLGCQIKMSKDIDGIRVALPQMTRNV  109 (115)
+T ss_dssp             CCCCCTTTTHHHHTBSSCCTTEEETTTCCCCTTCTTCEEECCCBCCSS
+T ss_pred             CCCCCHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEECCHHHHCE
+T ss_conf             789998899861011357887255886788777681799829134002
+
+