Phyre 2 alignment of FER_CAPAN_1-144 with c3p1mG

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc3p1mG_.40.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc3p1mG_.40.alig.html;h=1bcb7fec4125ed21b7a593af0d555944b62d0ca4;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3p1mG_.40.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3p1mG_.40.alig.html new file mode 100644 index 0000000..1bcb7fe --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3p1mG_.40.alig.html @@ -0,0 +1,276 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c3p1mG_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.54% Date Wed Jan 4 12:02:18 GMT 2017
Rank 40 Aligned Residues 91
% Identity 20% Template c3p1mG_
PDB info PDB header:electron transport Chain: G: PDB Molecule:adrenodoxin, mitochondrial; +PDBTitle: crystal structure of human ferredoxin-1 (fdx1) in complex with iron-2 sulfur cluster +
Resolution 2.54 Å
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	49	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure												.																											.	.				.
Query SS confidence												.																											.	.				.
Query Sequence	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	.	.	C	R	A	.	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D
Query Conservation												.																											.	.				.
Alig confidence												.																											.	.				.
Template Conservation
Template Sequence	K	I	T	V	H	F	I	N	R	D	G	E	T	L	T	T	K	G	K	V	G	D	S	L	L	D	V	V	V	E	N	N	L	D	I	D	G	F	G	A	C	E	G	T	L	A	C	S	T	C	H	L	I	F	E	D	H	I	Y	E
Template Known Secondary structure									T	T	S									T	T		B								T	T		S		T	T	T	T	T	T		S	S	S			S	T	T										T
Template Predicted Secondary structure
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

	105	.	.	.	.	110	.								.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																						.	.	.
Query SS confidence								.	.	.	.	.	.	.																						.	.	.
Query Sequence	Q	T	D	G	N	F	L	.	.	.	.	.	.	.	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	.	.	.	T	I	E	T	H	K	E
Query Conservation								.	.	.	.	.	.	.																						.	.	.
Alig confidence								.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence	K	L	D	A	I	T	D	E	E	N	D	M	L	D	L	A	Y	G	L	T	D	R	S	R	L	G	C	Q	I	C	L	T	K	S	M	D	N	M	T	V	R	V	P	E	T
Template Known Secondary structure	T	S												T	T	S	T	T			T	T				T	T	T		B			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170