Phyre 2 alignment of FER_CAPAN

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2al3a1.89.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2al3a1.89.alig.html;h=ab32e437b2b24d53c262d060720643c3ac7a4218;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2al3a1.89.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2al3a1.89.alig.html new file mode 100644 index 0000000..ab32e43 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2al3a1.89.alig.html @@ -0,0 +1,200 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d2al3a1 + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 22.34% Date Wed Jan 4 12:02:18 GMT 2017
Rank 89 Aligned Residues 27
% Identity 19% Template d2al3a1
SCOP info beta-Grasp (ubiquitin-like) + Ubiquitin-like + UBX domain +
Resolution UNK
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	52	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	V	S	V	L	A	P	N	G	R	R	H	T	V	K	V	T	P	S	T	V	L	L	Q	V	L	E	D	T
Template Known Secondary structure						T	T	S									T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.