X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2cjoa_.13.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd2cjoa_.13.alig.txt;h=231d902938c29c8292473fd77513b2a1a7e6a85e;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.txt
new file mode 100644
index 0000000..231d902
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d2cjoa_.13.alig.txt
@@ -0,0 +1,26 @@
+13 d2cjoa_ Probab=99.94   E-value=5.9e-27  Score=174.69  Aligned_columns=95  Identities=63%
+
+Q ss_pred             CEEEEEEEECCC-EEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCCC
+Q ss_conf             408999992697-29999679982899999878970002337858767179941421156
+Q FER_CAPAN_1-14   48 ASYKVKLITPDG-PIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQT  106 (144)
+Q Consensus        48 ~~~~V~~~~~~g-~~~~~~~~~~tiLdaa~~aGi~l~~sCr~G~CgtC~~~v~~G~v~~~  106 (144)
+                      |+|+|+|+.++| .++|++++|++||++++++||+++|+|++|.||+|+++|++|++.+.
+T Consensus         1 at~~Vt~~~~~g~~~~~~~~~g~~lL~a~~~~gi~i~~~C~~G~CgtC~~~v~~G~v~~~   60 (97)
+T d2cjoa_           1 ATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQS   60 (97)
+T ss_dssp             CCEEEEEECTTSCCCEEEECTTSCHHHHHHHHTCCCCCSSSSSSCCSSCCCEEEEEECCS
+T ss_pred             CCEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCCCCC
+T ss_conf             918999995799389999779983789999879963231667861116389973442577
+
+
+Q ss_pred             CCCCCCHHHHCCCEEEEEEEEECCCEEEEECCHHHH
+Q ss_conf             666689768349759964324506769992484540
+Q FER_CAPAN_1-14  107 DGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL  142 (144)
+Q Consensus       107 ~~~~l~~~~~~~g~vL~C~s~p~sDv~Ie~~~e~el  142 (144)
+                      +...|+++++++||+|+|+++|.+|++|++++++||
+T Consensus        61 ~~~~l~~~~~~~g~~LaCq~~~~~d~~i~~~~~~~l   96 (97)
+T d2cjoa_          61 DQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL   96 (97)
+T ss_dssp             SCSSCCHHHHHHTCCCGGGCCEEEEEEEESCCSSTT
+T ss_pred             CCCCCCHHHHCCCEEEEEEEEEECCEEEEECCCCCC
+T ss_conf             443489778249869975416608879982675445
+
+