X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2FsimpleGff3.gff;h=614b4408b28bdbeb583640e33eb03502cde12902;hb=ba5cebdea1dd8a54d241871017887b3cbcc1a87b;hp=0d8529309cf9b215fe88b13ab99ec4c87e67218b;hpb=26ba864a6c290121fe6cf616794d2d0bea65fb7d;p=jalview.git

diff --git a/examples/testdata/simpleGff3.gff b/examples/testdata/simpleGff3.gff
index 0d85293..614b440 100644
--- a/examples/testdata/simpleGff3.gff
+++ b/examples/testdata/simpleGff3.gff
@@ -6,13 +6,15 @@
 ##date 2015-01-16
 ##type DNA
 #
+# exonerate run with --showtargetgff generates 'features on the target' i.e. mappings to the query
 # tab-delimited
 # seqname source feature start end score strand frame attributes
 #
 seq1	exonerate:protein2genome:local	gene	8	11	3652	-	.	gene_id 0 ; sequence seq2 ; gene_orientation .
 seq1	exonerate:protein2genome:local	cds	9	11	.	-	.	
 seq1	exonerate:protein2genome:local	exon	9	11	.	-	.	insertions 3 ; deletions 6
-seq1	exonerate:protein2genome:local	similarity	8	11	3652	-	.	alignment_id 0 ; Query seq2 ; Align 11 1 3
+#seq1	exonerate:protein2genome:local	similarity	8	11	3652	-	.	alignment_id 0 ; Query seq2 ; Align 11 1 3
+seq1	exonerate:protein2genome:local	similarity	9	11	3652	-	.	alignment_id 0 ; Query seq2 ; Align 11 1 3
 #
 # appending FASTA sequences is strictly a GFF3 format feature
 # but Jalview is able to handle this mixture of GFF2 / GFF3 :-)
@@ -22,5 +24,3 @@ seq1	exonerate:protein2genome:local	similarity	8	11	3652	-	.	alignment_id 0 ; Qu
 ACTACGACACGACGACGACGACG
 >seq2
 CDEQEATGTQDAQEQAQC
-
-