X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples-jbake%2Ftemplates%2Fjvl_embedded.ftl;fp=examples-jbake%2Ftemplates%2Fjvl_embedded.ftl;h=572fccb30449c42249264c2919a0793e4b6b8796;hb=bb08578d55de6f432ffc5b2bd339467978ede1f4;hp=0000000000000000000000000000000000000000;hpb=1f33d994434b16b0c2a9bcfa32ec7eaf32ca19cc;p=jalview.git

diff --git a/examples-jbake/templates/jvl_embedded.ftl b/examples-jbake/templates/jvl_embedded.ftl
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+
+<h1>Embedded viewing of Alignments</h1>
+<p>The alignment below was generated from the following files:
+  <ul>
+    <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
+      FASTA format</li>
+    <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
+      Format Sequence Features file</li>
+    <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
+      Jalview Alignment Annotations File</li>
+  </ul>
+  <@jvlitebutton appjar="${content.jvl}" width=756 height=560 
+		 params={
+		 "file":"plantfdx.fa",
+		 "annotations":"plantfdx.annotations",
+		 "features":"plantfdx.features",
+		 "embedded":"true",
+		 "userDefinedColour":"C=yellow; R,K,H=FF5555; D,E=5555FF",
+		 "showFullId":"false"}></@jvlitebutton>
+  </p>