X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples-jbake%2Ftemplates%2Fjvl_examples.ftl;h=d0e40bf07b86574314735f6cde33cdd531e6d04c;hb=c9a1bce10c9354cc76a76d6d904ec05469f1b513;hp=f2bf8b1424e0d555f4742a140811b30fa4e6a844;hpb=b57c603c7d837e70f30a8ce7f4a1f0bb67167fb9;p=jalview.git

diff --git a/examples-jbake/templates/jvl_examples.ftl b/examples-jbake/templates/jvl_examples.ftl
index f2bf8b1..d0e40bf 100644
--- a/examples-jbake/templates/jvl_examples.ftl
+++ b/examples-jbake/templates/jvl_examples.ftl
@@ -12,7 +12,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
   <table width="90%">
     <tr>
       <td width="10%" valign="center">
-	<@jvlitebutton appjar="${content.jvl}" params={ "permissions":"all-permissions" , "file":"uniref50.fa"
+	<@jvlitebutton appjar="${content.jvl},${content.jmol}" params={ "permissions":"all-permissions" , "file":"uniref50.fa"
 		       , "treeFile":"ferredoxin.nw"
 		       , "userDefinedColour":"C=yellow; R,K,H=FF5555; D,E=5555FF"
 		       , "showFullId":"false"
@@ -24,7 +24,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 	group consensus and sequence logos are shown below the alignment.</td>
     </tr>
     <tr>
-      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl}" params={ "permissions":"all-permissions",
+      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl},${content.jmol}" params={ "permissions":"all-permissions",
        "file":"uniref50.fa"
 						     , "features":"exampleFeatures.txt"
 						     , "showFeatureSettings":"true"
@@ -49,7 +49,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 	FER1_MAIZE</td>
     </tr>
     <tr>
-      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl}" params={ "permissions":"all-permissions"
+      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl},${content.jmol}" params={ "permissions":"all-permissions"
 						       , "file":"jpred_msa.fasta"
 						       , "jnetfile":"jpred_msa.seq.concise"
 						       , "defaultColour":"Clustal"
@@ -71,7 +71,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
   </p>
   <table width="90%">
     <tr>
-      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl}" params={ "permissions":"all-permissions"
+      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl},${content.jmol}" params={ "permissions":"all-permissions"
 						     , "file":"RF00031_folded.stk"
 						     , "defaultColour":"Purine/Pyrimidine"
 						     , "showAnnotation":"true"
@@ -85,4 +85,20 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 	secondary structure annotation</td>
     </tr>
   </table>
+  <p>
+    <h2>Linked amino acid and cDNA alignments for homologous proteins</h2>
+  </p>
+  <table width="90%">
+    <tr>
+      <td width="10%" valign="center"><@jvlitebutton appjar="${content.jvl},${content.jmol}" params={ "permissions":"all-permissions"
+						     , "file":"estrogenReceptorCdna.fa"
+						     , "file2":"estrogenReceptorProtein.fa"
+						     , "defaultColour":"Purine/Pyrimidine"
+						     , "showAnnotation":"false"
+						     , "windowHeight":"300"
+						     , "windowWidth":"800"
+						     , "showFullId":"false"} prots=true /></td>
+      <td valign="center">Displays a split window view of protein and its related cDNA</td>
+    </tr>
+  </table>
 </div>