X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Faptx%2Faptx_configuration_files%2F_aptx_configuration_file_1;h=1c1da51541ff4d0cf4e258ce6d105fb2a9d99371;hb=42103714ff180f2fe5082bb4a17a545337ee784e;hp=a5a504e919e22c101313594b9f46301b23d14db8;hpb=71fdf8c5a582387b20a070f568c97db64b9800c6;p=jalview.git

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1 b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
index a5a504e..1c1da51 100644
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file_1
@@ -125,7 +125,6 @@ font_family:                               Arial,Helvetica,Verdana,Tahoma,Dialog
 font_size:                                 10
 antialias_screen:                          yes
 show_scale:                                yes
-show_branch_length_values:                 no
 cladogram_type:                            ext_node_sum_dep
 phylogeny_graphics_type:                   rectangular
 node_label_direction:                      horizontal
@@ -144,8 +143,10 @@ overview_placement_type:                   upper_left
 color_labels_same_as_branch_length_values: no
 display_sequence_relations:                no
 show_domain_labels:                        yes
+line_up_renderable_data:                   no
+right_align_domain_architectures:          no
 branch_length_value_digits:                3
-confidence_value_digits:                   3
+confidence_value_digits:                   2
 background_gradient:                       no
 allow_editing:                             yes
 ext_descendents_data_to_return_on:         window
@@ -199,10 +200,12 @@ show_taxonomy_common_names:     nodisplay no
 show_taxonomy_images:           nodisplay no
 show_annotations:               nodisplay no
 write_confidence_values:        display   ?
+write_branch_length_values:     display   no
 write_events:                   nodisplay no
 use_visual_styles:              display   no
 width_branches:                 display   no
 show_domain_architectures:      nodisplay no
+show_msa:                       nodisplay no
 show_binary_characters:         nodisplay no
 show_binary_character_counts:   nodisplay no
 display_internal_data:          display   yes