X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fdata%2Fsurfacing%2Fgenome_locations_eos.txt;h=cc3bf206e3bed52296594cc00ec855fbfe68205d;hb=a225753ad472510dcf0c590d097455652f1c3225;hp=54c982f7158d6fed2664fda35bcf74feecbd3b0d;hpb=733f974c9e515405a3f946c7f4d974902399449e;p=jalview.git

diff --git a/forester/data/surfacing/genome_locations_eos.txt b/forester/data/surfacing/genome_locations_eos.txt
index 54c982f..cc3bf20 100644
--- a/forester/data/surfacing/genome_locations_eos.txt
+++ b/forester/data/surfacing/genome_locations_eos.txt
@@ -1,4 +1,4 @@
-# Last updated: 140319
+# Last updated: 140709
 #
 # Ophistokonta::Animals (mammals)
 BOVIN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BOVIN.fasta
@@ -208,7 +208,7 @@ ENTBH   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTBH.fasta
 ENTDS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTDS.fasta
 ENTHI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ENTHI.fasta
 POLPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/POLPA.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Streptophyta
+# Viridaeplantae::Streptophyta
 AMBTC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AMBTC.fasta
 AQUCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AQUCA.fasta
 ARALY   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARALY.fasta
@@ -240,7 +240,7 @@ SORBI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SORBI.fasta
 SOYBN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/SOYBN.fasta
 THEHA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEHA.fasta
 VITVI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VITVI.fasta
-# Corticata::Archaeplastida::Viridaeplantae::Chlorophyta
+# Viridaeplantae::Chlorophyta
 ASCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ASCXX.fasta
 CHLRE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLRE.fasta
 CHLVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CHLVA.fasta
@@ -251,9 +251,11 @@ ORCXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ORCXX.fasta
 OSTLU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTLU.fasta
 OSTTA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/OSTTA.fasta
 VOLCA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/VOLCA.fasta
-# Corticata::Archaeplastida::Rhodophyta
+# Rhodophyta
 CYAME   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYAME.fasta
-# Corticata::Chromalveolates
+# Glaucophyta
+CYAPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/CYAPA.fasta
+# Chromalveolates
 AKEXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AKEXX.fasta
 ALIXX   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ALIXX.fasta
 AURAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AURAN.fasta
@@ -287,7 +289,7 @@ THAPS   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THAPS.fasta
 THEAN   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEAN.fasta
 THEPA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/THEPA.fasta
 TOXGO   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TOXGO.fasta
-# Cabozoa::Excavata
+# Excavata
 BODSA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BODSA.fasta
 GIAIC   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/GIAIC.fasta
 LEIBR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIBR.fasta
@@ -296,8 +298,9 @@ LEIMA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/LEIMA.fasta
 NAEGR   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/NAEGR.fasta
 TRIVA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRIVA.fasta
 TRYB2   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/TRYB2.fasta
-# Cabozoa::Rhizaria
+# Rhizaria
 BIGNA   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/BIGNA.fasta
+RETFI   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/RETFI.fasta
 # Archaea
 AERPE   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/AERPE.fasta
 ARCFU   /home/czmasek/PUBLIC/DATA/PROTEIN_PREDICTIONS_CDHIT_095/ARCFU.fasta