X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fdata%2Ftol_156.xml;h=80141c2c3e22fbf96d940e341f7df3900589cc13;hb=f22639c1820fdcee67d7cc9af0f5ffafb81757b3;hp=13d68de5d87c97bafe72ec0465e652f8159054d5;hpb=4c29f4d0aafdf3d4403de105111ce2926e558269;p=jalview.git

diff --git a/forester/data/tol_156.xml b/forester/data/tol_156.xml
index 13d68de..80141c2 100644
--- a/forester/data/tol_156.xml
+++ b/forester/data/tol_156.xml
@@ -1031,44 +1031,97 @@
                                             </taxonomy>
                                             <clade>
                                               <taxonomy>
-                                                <id provider="uniprot">8353</id>
-                                                <scientific_name>Xenopus</scientific_name>
-                                                <rank>genus</rank>
+                                                <id provider="uniprot">8342</id>
+                                                <scientific_name>Anura</scientific_name>
+                                                <rank>order</rank>
                                               </taxonomy>
                                               <clade>
                                                 <taxonomy>
-                                                  <id provider="uniprot">8355</id>
-                                                  <code>XENLA</code>
-                                                  <scientific_name>Xenopus laevis</scientific_name>
-                                                  <authority>Daudin, 1802</authority>
-                                                  <common_name>African clawed frog</common_name>
-                                                  <synonym>Bufo laevis</synonym>
-                                                  <rank>species</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
+                                                  <id provider="uniprot">8353</id>
+                                                  <scientific_name>Xenopus</scientific_name>
+                                                  <rank>genus</rank>
                                                 </taxonomy>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">8355</id>
+                                                    <code>XENLA</code>
+                                                    <scientific_name>Xenopus laevis</scientific_name>
+                                                    <authority>Daudin, 1802</authority>
+                                                    <common_name>African clawed frog</common_name>
+                                                    <synonym>Bufo laevis</synonym>
+                                                    <rank>species</rank>
+                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
+                                                  </taxonomy>
+                                                </clade>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">8364</id>
+                                                    <code>XENTR</code>
+                                                    <scientific_name>Xenopus tropicalis</scientific_name>
+                                                    <common_name>Western clawed frog</common_name>
+                                                    <synonym>Silurana tropicalis</synonym>
+                                                    <rank>species</rank>
+                                                    <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
+                                                  </taxonomy>
+                                                </clade>
                                               </clade>
                                               <clade>
                                                 <taxonomy>
-                                                  <id provider="uniprot">8364</id>
-                                                  <code>XENTR</code>
-                                                  <scientific_name>Xenopus tropicalis</scientific_name>
-                                                  <common_name>Western clawed frog</common_name>
-                                                  <synonym>Silurana tropicalis</synonym>
+                                                  <id provider="uniprot">8384</id>
+                                                  <code>BUFBU</code>
+                                                  <scientific_name>Bufo bufo</scientific_name>
+                                                  <common_name>European toad</common_name>
                                                   <rank>species</rank>
-                                                  <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
+                                                  <uri>http://www.naturephoto-cz.com/photos/others/common-toad-22611.jpg</uri>
                                                 </taxonomy>
                                               </clade>
                                             </clade>
                                             <clade>
                                               <taxonomy>
-                                                <id provider="uniprot">54263</id>
-                                                <code>MESAL</code>
-                                                <scientific_name>Mesotriton alpestris</scientific_name>
-                                                <common_name>Alpine newt</common_name>
-                                                <synonym>Ichthyosaura alpestris</synonym>
-                                                <rank>species</rank>
-                                                <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>
+                                                <id provider="uniprot">8293</id>
+                                                <scientific_name>Caudata</scientific_name>
+                                                <rank>order</rank>
                                               </taxonomy>
+                                              <clade>
+                                                <taxonomy>
+                                                  <id provider="uniprot">1331674</id>
+                                                  <scientific_name>Pleurodelinae</scientific_name>
+                                                  <rank>subfamily</rank>
+                                                </taxonomy>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">54263</id>
+                                                    <code>MESAL</code>
+                                                    <scientific_name>Mesotriton alpestris</scientific_name>
+                                                    <common_name>Alpine newt</common_name>
+                                                    <synonym>Ichthyosaura alpestris</synonym>
+                                                    <synonym>Mesotriton alpestris</synonym>
+                                                    <rank>species</rank>
+                                                    <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>
+                                                  </taxonomy>
+                                                </clade>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">8316</id>
+                                                    <code>NOTVI</code>
+                                                    <scientific_name>Notophthalmus viridescens</scientific_name>
+                                                    <common_name>Eastern newt</common_name>
+                                                    <synonym>Triturus viridescens</synonym>
+                                                    <rank>species</rank>
+                                                    <uri>http://www.jeffpippen.com/herps/enewt120908-9654sandybottomz.jpg</uri>
+                                                  </taxonomy>
+                                                </clade>
+                                              </clade>
+                                              <clade>
+                                                <taxonomy>
+                                                  <id provider="uniprot">8341</id>
+                                                  <code>SIRIN</code>
+                                                  <scientific_name>Siren intermedia</scientific_name>
+                                                  <common_name>Lesser siren</common_name>
+                                                  <rank>species</rank>
+                                                  <uri>http://us.i1.yimg.com/us.yimg.com/i/ligans/animals/m/ar0181_1m.jpg</uri>
+                                                </taxonomy>
+                                              </clade>
                                             </clade>
                                           </clade>
                                           <clade>
@@ -1526,9 +1579,13 @@
                                           <taxonomy>
                                             <id provider="uniprot">50557</id>
                                             <scientific_name>Insecta</scientific_name>
-                                            <common_name>true insects</common_name>
                                             <rank>class</rank>
                                           </taxonomy>
+                                          <reference doi="10.1146/annurev-ento-120710-100538">
+                                            <desc>Advances in Insect Phylogeny at the Dawn of the Postgenomic Era</desc>
+                                          </reference>
+                                          <reference>
+                                          </reference>
                                           <clade>
                                             <taxonomy>
                                               <id provider="uniprot">33340</id>
@@ -1539,12 +1596,18 @@
                                               <taxonomy>
                                                 <id provider="uniprot">33392</id>
                                                 <scientific_name>Endopterygota</scientific_name>
+                                                <synonym>Holometabola</synonym>
                                                 <rank>infraclass</rank>
                                               </taxonomy>
                                               <clade>
-                                                <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
+                                                <name>Mecopterida &amp; Neuropteroidea</name>
                                                 <clade>
-                                                  <name>Lepidoptera &amp; Diptera</name>
+                                                  <taxonomy>
+                                                    <scientific_name>Mecopterida</scientific_name>
+                                                  </taxonomy>
+                                                  <reference>
+                                                    <desc>The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei</desc>
+                                                  </reference>
                                                   <clade>
                                                     <taxonomy>
                                                       <id provider="uniprot">7147</id>
@@ -1759,8 +1822,8 @@
                                                   </clade>
                                                   <clade>
                                                     <taxonomy>
-                                                      <id provider="uniprot">104431</id>
-                                                      <scientific_name>Obtectomera</scientific_name>
+                                                      <id provider="uniprot">37567</id>
+                                                      <scientific_name>Ditrysia</scientific_name>
                                                     </taxonomy>
                                                     <clade>
                                                       <taxonomy>
@@ -1787,97 +1850,176 @@
                                                 </clade>
                                                 <clade>
                                                   <taxonomy>
-                                                    <id provider="uniprot">7400</id>
-                                                    <scientific_name>Apocrita</scientific_name>
-                                                    <common_name>wasps, ants and bees</common_name>
+                                                    <id provider="uniprot">41088</id>
+                                                    <scientific_name>Cucujiformia</scientific_name>
+                                                    <rank>infraorder</rank>
                                                   </taxonomy>
                                                   <clade>
                                                     <taxonomy>
-                                                      <id provider="uniprot">7434</id>
-                                                      <scientific_name>Aculeata</scientific_name>
-                                                      <rank>suborder</rank>
+                                                      <id provider="uniprot">217634</id>
+                                                      <code>ANOGL</code>
+                                                      <scientific_name>Anoplophora glabripennis</scientific_name>
+                                                      <common_name>Asian longhorn beetle</common_name>
+                                                      <synonym>Anoplophora nobilis</synonym>
+                                                      <rank>species</rank>
+                                                      <uri>http://bugguide.net/images/cache/WZMLBZXL2Z2HTH4HHR2H3H2HJH9H9Z5LJH5LWZ7LAZSLTH4HPZXHDHKLVZEH9ZEHRRPHJH7LAZPHZR4L3H7H3H9HZR.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">7070</id>
+                                                      <code>TRICA</code>
+                                                      <scientific_name>Tribolium castaneum</scientific_name>
+                                                      <common_name>Red flour beetle</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                </clade>
+                                              </clade>
+                                              <clade>
+                                                <taxonomy>
+                                                  <id provider="uniprot">7400</id>
+                                                  <scientific_name>Apocrita</scientific_name>
+                                                  <common_name>wasps, ants and bees</common_name>
+                                                </taxonomy>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">7434</id>
+                                                    <scientific_name>Aculeata</scientific_name>
+                                                    <rank>suborder</rank>
+                                                  </taxonomy>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">36668</id>
+                                                      <scientific_name>Formicidae</scientific_name>
+                                                      <rank>family</rank>
                                                     </taxonomy>
                                                     <clade>
                                                       <taxonomy>
-                                                        <id provider="uniprot">36668</id>
-                                                        <scientific_name>Formicidae</scientific_name>
-                                                        <common_name>ants</common_name>
-                                                        <rank>family</rank>
+                                                        <id provider="uniprot">34695</id>
+                                                        <scientific_name>Myrmicinae</scientific_name>
+                                                        <rank>subfamily</rank>
                                                       </taxonomy>
                                                       <clade>
                                                         <taxonomy>
-                                                          <id provider="uniprot">143999</id>
-                                                          <scientific_name>Attini</scientific_name>
-                                                          <rank>tribe</rank>
+                                                          <id provider="uniprot">12957</id>
+                                                          <code>ATTCE</code>
+                                                          <scientific_name>Atta cephalotes</scientific_name>
+                                                          <authority>Linnaeus, 1758</authority>
+                                                          <common_name>Leafcutter ant</common_name>
+                                                          <rank>species</rank>
+                                                          <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
                                                         </taxonomy>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">12957</id>
-                                                            <code>ATTCE</code>
-                                                            <scientific_name>Atta cephalotes</scientific_name>
-                                                            <authority>Linnaeus, 1758</authority>
-                                                            <common_name>Leafcutter ant</common_name>
-                                                            <rank>species</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
-                                                        <clade>
-                                                          <taxonomy>
-                                                            <id provider="uniprot">103372</id>
-                                                            <code>ACREC</code>
-                                                            <scientific_name>Acromyrmex echinatior</scientific_name>
-                                                            <authority>Forel, 1899</authority>
-                                                            <common_name>Panamanian leafcutter ant</common_name>
-                                                            <synonym>Acromyrmex octospinosus echinatior</synonym>
-                                                            <rank>species</rank>
-                                                            <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>
-                                                          </taxonomy>
-                                                        </clade>
                                                       </clade>
                                                       <clade>
                                                         <taxonomy>
-                                                          <id provider="uniprot">104421</id>
-                                                          <code>CAMFO</code>
-                                                          <scientific_name>Camponotus floridanus</scientific_name>
-                                                          <authority>Buckley, 1866</authority>
-                                                          <common_name>Florida carpenter ant</common_name>
+                                                          <id provider="uniprot">103372</id>
+                                                          <code>ACREC</code>
+                                                          <scientific_name>Acromyrmex echinatior</scientific_name>
+                                                          <authority>Forel, 1899</authority>
+                                                          <common_name>Panamanian leafcutter ant</common_name>
+                                                          <synonym>Acromyrmex octospinosus echinatior</synonym>
                                                           <rank>species</rank>
-                                                          <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>
+                                                          <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>
                                                         </taxonomy>
                                                       </clade>
                                                     </clade>
                                                     <clade>
                                                       <taxonomy>
-                                                        <id provider="uniprot">7460</id>
-                                                        <code>APIME</code>
-                                                        <scientific_name>Apis mellifera</scientific_name>
-                                                        <common_name>Honeybee</common_name>
+                                                        <id provider="uniprot">104421</id>
+                                                        <code>CAMFO</code>
+                                                        <scientific_name>Camponotus floridanus</scientific_name>
+                                                        <authority>Buckley, 1866</authority>
+                                                        <common_name>Florida carpenter ant</common_name>
                                                         <rank>species</rank>
-                                                        <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
+                                                        <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>
                                                       </taxonomy>
                                                     </clade>
                                                   </clade>
                                                   <clade>
                                                     <taxonomy>
-                                                      <id provider="uniprot">7425</id>
-                                                      <code>NASVI</code>
-                                                      <scientific_name>Nasonia vitripennis</scientific_name>
-                                                      <common_name>Parasitic wasp</common_name>
+                                                      <id provider="uniprot">7460</id>
+                                                      <code>APIME</code>
+                                                      <scientific_name>Apis mellifera</scientific_name>
+                                                      <common_name>Honeybee</common_name>
                                                       <rank>species</rank>
-                                                      <uri>http://www.freshpond.org/nasonia.jpg</uri>
+                                                      <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
                                                     </taxonomy>
                                                   </clade>
                                                 </clade>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">7425</id>
+                                                    <code>NASVI</code>
+                                                    <scientific_name>Nasonia vitripennis</scientific_name>
+                                                    <common_name>Parasitic wasp</common_name>
+                                                    <rank>species</rank>
+                                                    <uri>http://www.freshpond.org/nasonia.jpg</uri>
+                                                  </taxonomy>
+                                                </clade>
                                               </clade>
                                               <clade>
                                                 <taxonomy>
-                                                  <id provider="uniprot">7070</id>
-                                                  <code>TRICA</code>
-                                                  <scientific_name>Tribolium castaneum</scientific_name>
-                                                  <common_name>Red flour beetle</common_name>
-                                                  <rank>species</rank>
-                                                  <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>
+                                                  <id provider="uniprot">33341</id>
+                                                  <scientific_name>Orthopteroidea</scientific_name>
+                                                  <rank>infraclass</rank>
                                                 </taxonomy>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">6970</id>
+                                                    <scientific_name>Dictyoptera</scientific_name>
+                                                    <rank>superorder</rank>
+                                                  </taxonomy>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">6973</id>
+                                                      <code>BLAGE</code>
+                                                      <scientific_name>Blattella germanica</scientific_name>
+                                                      <common_name>German cockroach</common_name>
+                                                      <synonym>Blatta germanica</synonym>
+                                                      <rank>species</rank>
+                                                      <uri>http://www.biopix.com/photosmedium/Blattella%20germanica%2000017.JPG</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">136037</id>
+                                                      <code>ZOONE</code>
+                                                      <scientific_name>Zootermopsis nevadensis</scientific_name>
+                                                      <common_name>Dampwood termite</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://bugguide.net/images/cache/GQA0PQ10VQPK4KAKRKWKSKEKLKWKPQZS5KBK1QCK7KJ05KOK8KAKRK9K4QUK6Q10RKWKHKT02QWKSKEK5Q9KPQD0PQ.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                </clade>
+                                                <clade>
+                                                  <taxonomy>
+                                                    <id provider="uniprot">6993</id>
+                                                    <scientific_name>Orthoptera</scientific_name>
+                                                    <rank>order</rank>
+                                                  </taxonomy>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">7009</id>
+                                                      <code>SCHAM</code>
+                                                      <scientific_name>Schistocerca americana</scientific_name>
+                                                      <common_name>American grasshopper</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://bugguide.net/images/cache/BH7HOHIHZRZLAZXLVZQL4ZKL4Z4H6Z4HRRNHLR5HZR2HAHGHAHSLAHKL1H7HDH7H3HUH1ZXLUZGL3H2HAHZLAHXH.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">51074</id>
+                                                      <code>GRYPE</code>
+                                                      <scientific_name>Gryllus pennsylvanicus</scientific_name>
+                                                      <common_name>Field cricket</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://bugguide.net/images/raw/GL9Z5L9Z8LJHWHHR6HRREHVZUHCHIH8Z7HVHMHGZ7HTHQL6ZXHOHWH3H5LUZ7L9ZRLVH5HDHQL.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                </clade>
                                               </clade>
                                             </clade>
                                             <clade>
@@ -1894,6 +2036,32 @@
                                                 </taxonomy>
                                                 <clade>
                                                   <taxonomy>
+                                                    <id provider="uniprot">33351</id>
+                                                    <scientific_name>Panheteroptera</scientific_name>
+                                                  </taxonomy>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">7536</id>
+                                                      <code>ONCFA</code>
+                                                      <scientific_name>Oncopeltus fasciatus</scientific_name>
+                                                      <common_name>Large milkweed bug</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://bugguide.net/images/cache/309QLSWQT0IKUKSK2KSKUKRKUKGKBKRKNK6QD05QC05Q6KZKPKGQD00K9KGQ2KLKWK8QV0KKO0EQV0EQNK8Q2KGQ10.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                  <clade>
+                                                    <taxonomy>
+                                                      <id provider="uniprot">13249</id>
+                                                      <code>RHOPR</code>
+                                                      <scientific_name>Rhodnius prolixus</scientific_name>
+                                                      <common_name>Triatomid bug</common_name>
+                                                      <rank>species</rank>
+                                                      <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
+                                                    </taxonomy>
+                                                  </clade>
+                                                </clade>
+                                                <clade>
+                                                  <taxonomy>
                                                     <id provider="uniprot">7029</id>
                                                     <code>ACYPI</code>
                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>
@@ -1902,16 +2070,6 @@
                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
                                                   </taxonomy>
                                                 </clade>
-                                                <clade>
-                                                  <taxonomy>
-                                                    <id provider="uniprot">13249</id>
-                                                    <code>RHOPR</code>
-                                                    <scientific_name>Rhodnius prolixus</scientific_name>
-                                                    <common_name>Triatomid bug</common_name>
-                                                    <rank>species</rank>
-                                                    <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
-                                                  </taxonomy>
-                                                </clade>
                                               </clade>
                                               <clade>
                                                 <taxonomy>
@@ -1930,7 +2088,7 @@
                                               <id provider="uniprot">568273</id>
                                               <scientific_name>Machilis germanica</scientific_name>
                                               <rank>species</rank>
-                                              <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>
+                                              <uri>http://www.lucianabartolini.net/Immagini/Microcoryphia/Machilis-sp-02.jpg</uri>
                                             </taxonomy>
                                           </clade>
                                         </clade>
@@ -2250,7 +2408,7 @@
                                           <code>CAEEL</code>
                                           <scientific_name>Caenorhabditis elegans</scientific_name>
                                           <rank>species</rank>
-                                          <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
+                                          <uri>http://www.easternct.edu/~adams/images/celegansmain.jpg</uri>
                                         </taxonomy>
                                       </clade>
                                     </clade>
@@ -2519,7 +2677,7 @@
                               <scientific_name>Acropora digitifera</scientific_name>
                               <common_name>Staghorn coral</common_name>
                               <rank>species</rank>
-                              <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
+                              <uri>http://mygenomix.files.wordpress.com/2011/07/sn-coral.jpg</uri>
                             </taxonomy>
                           </clade>
                           <clade>
@@ -3493,7 +3651,7 @@
                                                             <common_name>Inky cap fungus</common_name>
                                                             <synonym>Hormographiella aspergillata</synonym>
                                                             <rank>strain</rank>
-                                                            <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
+                                                            <uri>http://www.pnas.org/content/107/26/cover-expansion.medium.gif</uri>
                                                           </taxonomy>
                                                         </clade>
                                                       </clade>
@@ -4995,7 +5153,6 @@
                   <taxonomy>
                     <id provider="uniprot">38254</id>
                     <scientific_name>Glaucocystophyceae</scientific_name>
-                    <synonym>Glaucophyta</synonym>
                     <rank>class</rank>
                   </taxonomy>
                   <clade>
@@ -5026,7 +5183,8 @@
                     <scientific_name>Emiliania huxleyi</scientific_name>
                     <synonym>Pontosphaera huxleyi</synonym>
                     <rank>species</rank>
-                    <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>
+                    <uri>http://www.nhm.ac.uk/resources-rx/images/1049/emiliania-huxleyi-light-microscope-image_68318_1.jpg</uri>
+                    <uri>http://cmore.soest.hawaii.edu/education/kidskorner/images/emiliania_600px.jpg</uri>
                   </taxonomy>
                 </clade>
                 <clade>
@@ -5614,11 +5772,28 @@
                 </taxonomy>
                 <clade>
                   <taxonomy>
-                    <id provider="uniprot">71427</id>
-                    <scientific_name>Allogromia laticollaris</scientific_name>
-                    <rank>species</rank>
-                    <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>
+                    <id provider="uniprot">29178</id>
+                    <scientific_name>Foraminifera</scientific_name>
+                    <common_name>foraminifers</common_name>
+                    <rank>class</rank>
                   </taxonomy>
+                  <clade>
+                    <taxonomy>
+                      <id provider="uniprot">71427</id>
+                      <scientific_name>Allogromia laticollaris</scientific_name>
+                      <rank>species</rank>
+                      <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>
+                    </taxonomy>
+                  </clade>
+                  <clade>
+                    <taxonomy>
+                      <id provider="uniprot">46433</id>
+                      <code>RETFI</code>
+                      <scientific_name>Reticulomyxa filosa</scientific_name>
+                      <rank>species</rank>
+                      <uri>http://forambarcoding.unige.ch/system/pictures/269/s600/R.filosa2.jpg</uri>
+                    </taxonomy>
+                  </clade>
                 </clade>
                 <clade>
                   <taxonomy>