X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fbuild.xml;h=2cbdd38b7586773b8638c6ed8fe71b3d47d6112a;hb=8d6e81da091d432309f2f7034cf93dbc5ba5e82a;hp=63e3e21b62f6b65a1e0e15a8d5842580ea91321a;hpb=d758b1aea13581645d108e548acc3dc979c68880;p=jalview.git

diff --git a/forester/java/build.xml b/forester/java/build.xml
index 63e3e21..2cbdd38 100644
--- a/forester/java/build.xml
+++ b/forester/java/build.xml
@@ -28,15 +28,17 @@
 
 	<target name="compile" description="Compiles the Task" depends="clean">
 		<mkdir dir="${classes.dir}" />
-		<javac source="1.6" target="1.6" debug="true" debuglevel="lines,source" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar};${openchartjar}">
+		<javac source="1.8" target="1.8" debug="true" debuglevel="lines,source" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar};${openchartjar}">
 			<compilerarg value="-Xlint:deprecation" />
+			<compilerarg value="-Xlint:unchecked" />
 		</javac> 
 	</target>
 
 	<target name="compile_applets_only" description="Compiles the Task" depends="clean">
 		<mkdir dir="${classes.dir}" />
-		<javac source="1.6" target="1.6" debug="false" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar}">
+		<javac source="1.8" target="1.8" debug="true" debuglevel="lines,source" srcdir="${src.dir}" destdir="${classes.dir}" optimize="on" verbose="false" classpath="${itextjar};${commonscodecjar};${openchartjar}">
 			<compilerarg value="-Xlint:deprecation" />
+			<compilerarg value="-Xlint:unchecked" />
 		</javac> 
 	</target>
 
@@ -69,6 +71,14 @@
 	</target>
 
 	<target name="jar_applets_only" description="JARs the classes files" depends="compile_applets_only,copy_resources">
+		<unjar src="${itextjar}" dest="${classes.dir}">
+		    <patternset>
+		        <include name="**/*.class" />
+		        <include name="**/*.afm" />
+		        <include name="**/*.txt" />
+		        <exclude name="**/*Test*.class" />
+		    </patternset>
+		 </unjar>
 		<unjar src="${commonscodecjar}" dest="${classes.dir}">
             <patternset>
                 <include name="**/*.class" />
@@ -80,6 +90,7 @@
 			          org/forester/evoinference/**
 			          org/forester/go/**
 			          org/forester/go/etc/**
+			          org/forester/msa_compactor/**
 			          org/forester/pccx/**
 			          org/forester/surfacing/**
 			          org/forester/test/**