X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fconfadd.java;h=b48cde9f84b19b4eba9eda218a3c8306f2a9aae0;hb=327fc7c7a9a46cbe8983b0ca2a54cc6f45cd1695;hp=fc4dd4168ff50907dc3931e3c1f46fc06313b163;hpb=e174d62534f7fc6f3de133d523a402a87735b27f;p=jalview.git diff --git a/forester/java/src/org/forester/application/confadd.java b/forester/java/src/org/forester/application/confadd.java index fc4dd41..b48cde9 100644 --- a/forester/java/src/org/forester/application/confadd.java +++ b/forester/java/src/org/forester/application/confadd.java @@ -22,7 +22,7 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.application; @@ -204,7 +204,7 @@ public class confadd { } double value = 1; if ( norm > 0 ) { - value = norm / ( 1 + last - first ); + value = norm / ( ( 1 + last ) - first ); } ForesterUtil.programMessage( PRG_NAME, "first topology to use: " + first ); String is_last = ""; @@ -212,7 +212,7 @@ public class confadd { is_last = " (corresponds to last topology in file)"; } ForesterUtil.programMessage( PRG_NAME, "last topology to use : " + last + is_last ); - ForesterUtil.programMessage( PRG_NAME, "sum of topologies used as evaluators: " + ( last - first + 1 ) ); + ForesterUtil.programMessage( PRG_NAME, "sum of topologies used as evaluators: " + ( ( last - first ) + 1 ) ); if ( norm > 0 ) { ForesterUtil.programMessage( PRG_NAME, "normalizer: " + norm + " (" + ForesterUtil.round( value, 6 ) + ")" ); }