X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fconfadd.java;h=dbc4d507e46ae80d0b5da8d5c272bff050531e8c;hb=9fe19ef3fae04d8403a6cbcf67443f38c9ba4491;hp=efccace737751e88eb483439acf14a08e5812928;hpb=493e40b0c936b65da342134da37e8b856b9b80af;p=jalview.git diff --git a/forester/java/src/org/forester/application/confadd.java b/forester/java/src/org/forester/application/confadd.java index efccace..dbc4d50 100644 --- a/forester/java/src/org/forester/application/confadd.java +++ b/forester/java/src/org/forester/application/confadd.java @@ -6,7 +6,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -16,7 +16,7 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA @@ -148,8 +148,9 @@ public class confadd { targets = factory.create( target_file, ForesterUtil.createParserDependingOnFileType( target_file, true ) ); } catch ( final IOException e ) { - ForesterUtil.fatalError( PRG_NAME, "failed to read target phylogenies from [" + target_file + "]: " - + e.getLocalizedMessage() ); + ForesterUtil.fatalError( PRG_NAME, + "failed to read target phylogenies from [" + target_file + "]: " + + e.getLocalizedMessage() ); } int counter = 0; for( final Phylogeny target : targets ) { @@ -168,8 +169,8 @@ public class confadd { ForesterUtil.programMessage( PRG_NAME, "read in a total of " + targets.length + " targets" ); } try { - evaluators = factory.create( evaluators_file, ForesterUtil - .createParserDependingOnFileType( evaluators_file, true ) ); + evaluators = factory.create( evaluators_file, + ForesterUtil.createParserDependingOnFileType( evaluators_file, true ) ); } catch ( final IOException e ) { ForesterUtil.fatalError( PRG_NAME, "failed to read evaluator topologies from [" + evaluators_file + "]: "