X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fcount_support.java;h=3df54ba98f32d7826f6f4557c9dd5977a6718287;hb=73c5b11c1a00e539afb246e345ebf3f042dded78;hp=e094f69ed4313b6948f5cd4fdfb8e8968a7243c5;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git diff --git a/forester/java/src/org/forester/application/count_support.java b/forester/java/src/org/forester/application/count_support.java index e094f69..3df54ba 100644 --- a/forester/java/src/org/forester/application/count_support.java +++ b/forester/java/src/org/forester/application/count_support.java @@ -32,6 +32,7 @@ import java.util.Arrays; import java.util.List; import org.forester.io.parsers.PhylogenyParser; +import org.forester.io.parsers.util.ParserUtils; import org.forester.io.writers.PhylogenyWriter; import org.forester.phylogeny.Phylogeny; import org.forester.phylogeny.PhylogenyMethods; @@ -104,7 +105,7 @@ public class count_support { Phylogeny[] ev = null; try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( phylogeny_infile, true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( phylogeny_infile, true ); p = factory.create( phylogeny_infile, pp )[ 0 ]; } catch ( final Exception e ) { @@ -113,7 +114,7 @@ public class count_support { } try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( evaluators_infile, true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( evaluators_infile, true ); ev = factory.create( evaluators_infile, pp ); } catch ( final Exception e ) {