X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fcount_support.java;h=9be5f899a23ae9eeff3ad3803dd958076e42d41f;hb=7a194f3da2c3a659ecc67bff021d9f64c845e923;hp=b57f3c5f7b4698937cd7d6491ea411972f6cd43f;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/application/count_support.java b/forester/java/src/org/forester/application/count_support.java
index b57f3c5..9be5f89 100644
--- a/forester/java/src/org/forester/application/count_support.java
+++ b/forester/java/src/org/forester/application/count_support.java
@@ -186,7 +186,6 @@ public class count_support {
                     }
                     else {
                         w.toNewHampshire( evaluator_phylogenies_above_threshold,
-                                          true,
                                           branch_lengths_in_ev_out,
                                           evaluators_outfile,
                                           ";" + ForesterUtil.getLineSeparator() );
@@ -200,7 +199,7 @@ public class count_support {
                                            ";" + ForesterUtil.getLineSeparator() );
                     }
                     else {
-                        w.toNewHampshire( Arrays.asList( ev ), true, branch_lengths_in_ev_out, evaluators_outfile, ";"
+                        w.toNewHampshire( Arrays.asList( ev ), branch_lengths_in_ev_out, evaluators_outfile, ";"
                                 + ForesterUtil.getLineSeparator() );
                     }
                 }