X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fdom_dup.java;h=e9cdba0571cb47b9d81d080d601371b0fc51febf;hb=612e51e63eb66025a04439fc380384a945a4a30f;hp=64b4640b0e7716be1387daf9ab200f6120f8ff17;hpb=c244a8d7a48af45dce446f57a4d7a24ea3a8c912;p=jalview.git

diff --git a/forester/java/src/org/forester/application/dom_dup.java b/forester/java/src/org/forester/application/dom_dup.java
index 64b4640..e9cdba0 100644
--- a/forester/java/src/org/forester/application/dom_dup.java
+++ b/forester/java/src/org/forester/application/dom_dup.java
@@ -51,7 +51,7 @@ public class dom_dup {
             final File intree_file = cla.getFile( 2 );
             final File species_groups_file = cla.getFile( 1 );
             final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
-            final Phylogeny phy = factory.create( intree_file, new PhyloXmlParser() )[ 0 ];
+            final Phylogeny phy = factory.create( intree_file, PhyloXmlParser.createPhyloXmlParserXsdValidating() )[ 0 ];
             ForesterUtil.programMessage( PRG_NAME, "Pattern string: " + pattern_str );
             final Pattern pattern = Pattern.compile( pattern_str );
             ForesterUtil.programMessage( PRG_NAME, "Pattern is: " + pattern );