X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fgsdi.java;h=7e2d51418d973c67c252ab7994980c42379c1d20;hb=391381d661a230af98751dd6eba77bb2353c4d3e;hp=711b1e6f4712b46f9bbd372b053d0a415ff9b1e4;hpb=b819fa043cac2722618af63f0d4752ffa1a40890;p=jalview.git

diff --git a/forester/java/src/org/forester/application/gsdi.java b/forester/java/src/org/forester/application/gsdi.java
index 711b1e6..7e2d514 100644
--- a/forester/java/src/org/forester/application/gsdi.java
+++ b/forester/java/src/org/forester/application/gsdi.java
@@ -180,7 +180,7 @@ public final class gsdi {
         }
         try {
             final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
-            gene_tree = factory.create( gene_tree_file, new PhyloXmlParser() )[ 0 ];
+            gene_tree = factory.create( gene_tree_file, PhyloXmlParser.createPhyloXmlParserXsdValidating() )[ 0 ];
         }
         catch ( final IOException e ) {
             fatalError( "error",
@@ -245,12 +245,12 @@ public final class gsdi {
         final long start_time = new Date().getTime();
         try {
             if ( base_algorithm == ALGORITHM.GSDI ) {
-                System.out.println( "Algorithm       : GSDI" );
-                log_writer.println( "Algorithm       : GSDI" );
+                System.out.println( "Algorithm                                : GSDI" );
+                log_writer.println( "Algorithm                                : GSDI" );
             }
             else if ( base_algorithm == ALGORITHM.GSDIR ) {
-                System.out.println( "Algorithm       : GSDIR" );
-                log_writer.println( "Algorithm       : GSDIR" );
+                System.out.println( "Algorithm                                : GSDIR" );
+                log_writer.println( "Algorithm                                : GSDIR" );
             }
             System.out.println( "Use most parsimonous duplication model   : " + most_parsimonous_duplication_model );
             System.out.println( "Allow stripping of gene tree nodes       : " + allow_stripping_of_gene_tree );