X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fmsa_compactor.java;h=bcfe2a610b09c2a31994ca4a6a09c24b941b957b;hb=5bae4861f59350b3158d6ebd5034ea7698d81b98;hp=e555593a94468ac63332e0a5b9b509d3142075d2;hpb=03e7c823c2f9f2b9766bf486a164a8eec69d5214;p=jalview.git

diff --git a/forester/java/src/org/forester/application/msa_compactor.java b/forester/java/src/org/forester/application/msa_compactor.java
index e555593..bcfe2a6 100644
--- a/forester/java/src/org/forester/application/msa_compactor.java
+++ b/forester/java/src/org/forester/application/msa_compactor.java
@@ -142,7 +142,7 @@ public class msa_compactor {
                 msa = DeleteableMsa.createInstance( FastaParser.parseMsa( is ) );
             }
             else {
-                msa = DeleteableMsa.createInstance( GeneralMsaParser.parse( is ) );
+                msa = DeleteableMsa.createInstance( GeneralMsaParser.parseMsa( is ) );
             }
             final DescriptiveStatistics initial_msa_stats = MsaMethods.calculateEffectiveLengthStatistics( msa );
             if (cla.isOptionSet( INFO_ONLY_OPTION ) ) {