X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fpccx.java;h=e52c11606dfe7fa37730e12e821099447cb493b5;hb=8e37534c03f75befdad0d75fbf8e05be11cde71a;hp=0cb65773c7fa08f54992199f20e1da18728a959d;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git diff --git a/forester/java/src/org/forester/application/pccx.java b/forester/java/src/org/forester/application/pccx.java index 0cb6577..e52c116 100644 --- a/forester/java/src/org/forester/application/pccx.java +++ b/forester/java/src/org/forester/application/pccx.java @@ -33,6 +33,7 @@ import java.util.Arrays; import java.util.List; import org.forester.io.parsers.PhylogenyParser; +import org.forester.io.parsers.util.ParserUtils; import org.forester.io.writers.PhylogenyWriter; import org.forester.pccx.BasicExternalNodeBasedCoverageExtender; import org.forester.pccx.Coverage; @@ -144,7 +145,7 @@ public class pccx { Phylogeny[] phylogenies = null; try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( phylogenies_infile, true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( phylogenies_infile, true ); phylogenies = factory.create( phylogenies_infile, pp ); } catch ( final IOException e ) {