X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fpfam_go.java;h=df679e175607780564c45217825a566f416861d5;hb=44268696695fe4454ddbd06791c4067f219b75fe;hp=475b5d495df0a13805a4b138d0e042b0c9918f39;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/application/pfam_go.java b/forester/java/src/org/forester/application/pfam_go.java
index 475b5d4..df679e1 100644
--- a/forester/java/src/org/forester/application/pfam_go.java
+++ b/forester/java/src/org/forester/application/pfam_go.java
@@ -78,7 +78,7 @@ public class pfam_go {
                     encountered_domains.add( line );
                     boolean found = false;
                     for( final PfamToGoMapping mapping : mappings ) {
-                        if ( mapping.getKey().getId().equals( line ) ) {
+                        if ( mapping.getKey().equals( line ) ) {
                             System.out.println( mapping.getValue() );
                             found = true;
                         }
@@ -150,7 +150,7 @@ public class pfam_go {
         System.out.println( "Usage:" );
         System.out.println();
         System.out.println( PRG_NAME + " [-" + ALLOW_DUPLICATES_OPTION
-                + " to allow duplicates] <pfam2go file> <file with pfams>" );
+                            + " to allow duplicates] <pfam2go file> <file with pfams>" );
         System.out.println();
         System.out.println();
     }