X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fphyloxml_converter.java;h=6d4520732bbec2cfcbf5e1a104af8bfa7b823e4e;hb=73c5b11c1a00e539afb246e345ebf3f042dded78;hp=bee52a075202a99868115778d8f339bf019fa778;hpb=5c10c6e6d65f086e4a021d358314f377bb97342d;p=jalview.git

diff --git a/forester/java/src/org/forester/application/phyloxml_converter.java b/forester/java/src/org/forester/application/phyloxml_converter.java
index bee52a0..6d45207 100644
--- a/forester/java/src/org/forester/application/phyloxml_converter.java
+++ b/forester/java/src/org/forester/application/phyloxml_converter.java
@@ -255,6 +255,9 @@ public class phyloxml_converter {
         if ( order_subtrees ) {
             for( final Phylogeny phy : phys ) {
                 PhylogenyMethods.orderAppearance( phy.getRoot(), true, true, DESCENDANT_SORT_PRIORITY.TAXONOMY );
+                phy.externalNodesHaveChanged();
+                phy.hashIDs();
+                phy.recalculateNumberOfExternalDescendants( true );
             }
         }
         try {