X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2FprintAllSpecies.java;h=df7ae173924ed8eae9258922e9f3f3f8d1027f4d;hb=4acc1443d8c6c6f47c26a7c57357bdcdad27ecf8;hp=3d3192933647ff11b7b8704a4cbe96b9521c0e08;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git diff --git a/forester/java/src/org/forester/application/printAllSpecies.java b/forester/java/src/org/forester/application/printAllSpecies.java index 3d31929..df7ae17 100644 --- a/forester/java/src/org/forester/application/printAllSpecies.java +++ b/forester/java/src/org/forester/application/printAllSpecies.java @@ -30,12 +30,12 @@ import java.io.FileWriter; import java.io.PrintWriter; import org.forester.io.parsers.PhylogenyParser; +import org.forester.io.parsers.util.ParserUtils; import org.forester.phylogeny.Phylogeny; import org.forester.phylogeny.PhylogenyMethods; import org.forester.phylogeny.PhylogenyNode; import org.forester.phylogeny.factories.ParserBasedPhylogenyFactory; import org.forester.phylogeny.factories.PhylogenyFactory; -import org.forester.util.ForesterUtil; public class printAllSpecies { @@ -53,7 +53,7 @@ public class printAllSpecies { outfile = new File( args[ 1 ] ); try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( infile, true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( infile, true ); tree = factory.create( infile, pp )[ 0 ]; } catch ( final Exception e ) {