X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2FprintSameOrder.java;h=90040469ad4bb70d9c07477f265176833164695a;hb=73c5b11c1a00e539afb246e345ebf3f042dded78;hp=530a0fed32b6747acae1c42708741380e36d8e46;hpb=493e40b0c936b65da342134da37e8b856b9b80af;p=jalview.git diff --git a/forester/java/src/org/forester/application/printSameOrder.java b/forester/java/src/org/forester/application/printSameOrder.java index 530a0fe..9004046 100644 --- a/forester/java/src/org/forester/application/printSameOrder.java +++ b/forester/java/src/org/forester/application/printSameOrder.java @@ -5,7 +5,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -15,7 +15,7 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA @@ -30,11 +30,11 @@ import java.io.FileWriter; import java.io.PrintWriter; import org.forester.io.parsers.PhylogenyParser; +import org.forester.io.parsers.util.ParserUtils; import org.forester.phylogeny.Phylogeny; import org.forester.phylogeny.PhylogenyNode; import org.forester.phylogeny.factories.ParserBasedPhylogenyFactory; import org.forester.phylogeny.factories.PhylogenyFactory; -import org.forester.util.ForesterUtil; public class printSameOrder { @@ -52,7 +52,7 @@ public class printSameOrder { outfile = new File( args[ 1 ] ); try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( infile, true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( infile, true ); tree = factory.create( infile, pp )[ 0 ]; } catch ( final Exception e ) {