X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Frio.java;h=1ee56283d6760826cde0fdc4d2fa986b5e9734c1;hb=17dce416188e13160d9bf0840bb370e3adca041e;hp=4f90ca020aca7e85eca39b0eb48442fd21719f95;hpb=7a7a89b113566b2749f1e8e4fbb3064241145201;p=jalview.git

diff --git a/forester/java/src/org/forester/application/rio.java b/forester/java/src/org/forester/application/rio.java
index 4f90ca0..1ee5628 100644
--- a/forester/java/src/org/forester/application/rio.java
+++ b/forester/java/src/org/forester/application/rio.java
@@ -319,13 +319,13 @@ public class rio {
                     final NHXParser nhx = ( NHXParser ) p;
                     nhx.setReplaceUnderscores( false );
                     nhx.setIgnoreQuotes( true );
-                    nhx.setTaxonomyExtraction( TAXONOMY_EXTRACTION.PFAM_STYLE_RELAXED );
+                    nhx.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGGRESSIVE );
                 }
                 else if ( p instanceof NexusPhylogeniesParser ) {
                     final NexusPhylogeniesParser nex = ( NexusPhylogeniesParser ) p;
                     nex.setReplaceUnderscores( false );
                     nex.setIgnoreQuotes( true );
-                    nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.PFAM_STYLE_RELAXED );
+                    nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGGRESSIVE );
                 }
                 else {
                     throw new RuntimeException( "unknown parser type: " + p );