X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Frio.java;h=1ee56283d6760826cde0fdc4d2fa986b5e9734c1;hb=b80a84de8b4d07847496bc04f51b45bacd146ff3;hp=1b9687ee2fec9cc4b0a18eb655ccb84d55f1a1f0;hpb=25e80a3f3c5c5c957fbf8879fdeb3a022d98b057;p=jalview.git diff --git a/forester/java/src/org/forester/application/rio.java b/forester/java/src/org/forester/application/rio.java index 1b9687e..1ee5628 100644 --- a/forester/java/src/org/forester/application/rio.java +++ b/forester/java/src/org/forester/application/rio.java @@ -319,13 +319,13 @@ public class rio { final NHXParser nhx = ( NHXParser ) p; nhx.setReplaceUnderscores( false ); nhx.setIgnoreQuotes( true ); - nhx.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGRESSIVE ); + nhx.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGGRESSIVE ); } else if ( p instanceof NexusPhylogeniesParser ) { final NexusPhylogeniesParser nex = ( NexusPhylogeniesParser ) p; nex.setReplaceUnderscores( false ); nex.setIgnoreQuotes( true ); - nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGRESSIVE ); + nex.setTaxonomyExtraction( TAXONOMY_EXTRACTION.AGGRESSIVE ); } else { throw new RuntimeException( "unknown parser type: " + p );