X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fsdi.java;h=47e493f483331e4cafdd9d4ab1dd130876d6dc00;hb=89d7b6ec1ddc3a3c1e953cf389c24ba7aae7fbfe;hp=08d94fba3d25b1651a0cbc8d99fd24fd1d7a0f5d;hpb=493e40b0c936b65da342134da37e8b856b9b80af;p=jalview.git diff --git a/forester/java/src/org/forester/application/sdi.java b/forester/java/src/org/forester/application/sdi.java index 08d94fb..47e493f 100644 --- a/forester/java/src/org/forester/application/sdi.java +++ b/forester/java/src/org/forester/application/sdi.java @@ -5,7 +5,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -15,7 +15,7 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA @@ -130,16 +130,18 @@ public final class sdi { species_tree = factory.create( species_tree_file, new PhyloXmlParser() )[ 0 ]; } catch ( final IOException e ) { - ForesterUtil.fatalError( sdi.PRG_NAME, "Failed to read species tree from \"" + gene_tree_file + "\" [" - + e.getMessage() + "]" ); + ForesterUtil.fatalError( sdi.PRG_NAME, + "Failed to read species tree from \"" + gene_tree_file + "\" [" + e.getMessage() + + "]" ); } try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); gene_tree = factory.create( gene_tree_file, new PhyloXmlParser() )[ 0 ]; } catch ( final IOException e ) { - ForesterUtil.fatalError( sdi.PRG_NAME, "Failed to read gene tree from \"" + gene_tree_file + "\" [" - + e.getMessage() + "]" ); + ForesterUtil.fatalError( sdi.PRG_NAME, + "Failed to read gene tree from \"" + gene_tree_file + "\" [" + e.getMessage() + + "]" ); } gene_tree.setRooted( true ); species_tree.setRooted( true );