X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fsupport_statistics.java;h=ae8083a00e2b6abc8f822278c56d1fb19c874a47;hb=3766acb8ee5646371556c76cf657e669e7809dc2;hp=7e26be7e675e94f6a7ef2e83a43126127a3ce5fa;hpb=493e40b0c936b65da342134da37e8b856b9b80af;p=jalview.git diff --git a/forester/java/src/org/forester/application/support_statistics.java b/forester/java/src/org/forester/application/support_statistics.java index 7e26be7..ae8083a 100644 --- a/forester/java/src/org/forester/application/support_statistics.java +++ b/forester/java/src/org/forester/application/support_statistics.java @@ -5,7 +5,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -15,13 +15,13 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.application; @@ -32,6 +32,7 @@ import java.util.ArrayList; import java.util.List; import org.forester.io.parsers.PhylogenyParser; +import org.forester.io.parsers.util.ParserUtils; import org.forester.phylogeny.Phylogeny; import org.forester.phylogeny.PhylogenyMethods; import org.forester.phylogeny.PhylogenyNode; @@ -176,8 +177,7 @@ public final class support_statistics { for( int i = 0; i < phylogenies_infiles.length; i++ ) { try { final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); - final PhylogenyParser pp = ForesterUtil - .createParserDependingOnFileType( phylogenies_infiles[ i ], true ); + final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( phylogenies_infiles[ i ], true ); phylogenies[ i ] = factory.create( phylogenies_infiles[ i ], pp )[ 0 ]; } catch ( final IOException e ) {