X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fsupport_transfer.java;h=340bcf4833206fec1abebfbfb91991c4d2aa886b;hb=e836cdba7ba52df7a886c72842beaaf9a3eea699;hp=a96b834d6f574a38f49d56daf71214175ef09c15;hpb=6062dfb954cafb6af22e01af89222888d9d5ba66;p=jalview.git diff --git a/forester/java/src/org/forester/application/support_transfer.java b/forester/java/src/org/forester/application/support_transfer.java index a96b834..340bcf4 100644 --- a/forester/java/src/org/forester/application/support_transfer.java +++ b/forester/java/src/org/forester/application/support_transfer.java @@ -48,7 +48,7 @@ public final class support_transfer { * Transfers branch length values from one Phylogeny to another. It is * mainly a "main method" for method "copyBranchLengthValuesFrom( Phylogeny )" * of org.forester.phylogeny.Phylogeny, to be used in other (Perl) programs. - * + * * @param args[0] * Filename (String) for Phylogeny which has correct branch * length values @@ -60,8 +60,8 @@ public final class support_transfer { * @param args[2] * String Filename (String) for outputfile * @param args[3] - * String [number of tree with correct bl to use in case treefile contains more than one, default 0] - + * String [number of tree with correct bl to use in case treefile contains more than one, default 0] + */ public static void main( final String args[] ) { Phylogeny phylogeny_w_bl = null; // Has correct branch lengths @@ -147,7 +147,7 @@ public final class support_transfer { * Important (but obvious): The topology of both trees needs to be the same. * The method is not robust, and might produce wrong results if the internal * topology differs or if the external node names are not unique. - * + * * @param from * the Phylogeny to copy the support values from * @param to