X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fapplication%2Fta.java;h=053b3429f796ddf9975f7092a65e3dc8f03cc677;hb=73c5b11c1a00e539afb246e345ebf3f042dded78;hp=b46091629c8d7adbd3139db5210a40d4ec8b6346;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/application/ta.java b/forester/java/src/org/forester/application/ta.java
index b460916..053b342 100644
--- a/forester/java/src/org/forester/application/ta.java
+++ b/forester/java/src/org/forester/application/ta.java
@@ -32,6 +32,7 @@ import java.util.Date;
 import java.util.List;
 
 import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
 import org.forester.io.writers.PhylogenyWriter;
 import org.forester.phylogeny.Phylogeny;
 import org.forester.phylogeny.factories.ParserBasedPhylogenyFactory;
@@ -127,7 +128,7 @@ public class ta {
         }
         try {
             final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
-            final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( species_tree_file, true );
+            final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( species_tree_file, true );
             species_tree = factory.create( species_tree_file, pp )[ 0 ];
         }
         catch ( final IOException e ) {
@@ -137,7 +138,7 @@ public class ta {
         }
         try {
             final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance();
-            final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( gene_tree_file, true );
+            final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( gene_tree_file, true );
             gene_tree = factory.create( gene_tree_file, pp )[ 0 ];
         }
         catch ( final IOException e ) {