X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2FAptxFrame.java;fp=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2FAptxFrame.java;h=00817f99470148d0c30cbc4b303c56d23cd48030;hb=e7d376ff860a6de1f343ad52f9f2a765239412c3;hp=0000000000000000000000000000000000000000;hpb=693353f5ea85d3e50a77f9b1cd9d87711d23412b;p=jalview.git

diff --git a/forester/java/src/org/forester/archaeopteryx/AptxFrame.java b/forester/java/src/org/forester/archaeopteryx/AptxFrame.java
new file mode 100644
index 0000000..00817f9
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+++ b/forester/java/src/org/forester/archaeopteryx/AptxFrame.java
@@ -0,0 +1,60 @@
+package org.forester.archaeopteryx;
+
+
+
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+
+import org.forester.archaeopteryx.tools.InferenceManager;
+import org.forester.archaeopteryx.tools.ProcessPool;
+
+public interface AptxFrame extends ActionListener {
+
+    NHFilter            nhfilter           = new NHFilter();
+    NHXFilter           nhxfilter          = new NHXFilter();
+    XMLFilter           xmlfilter          = new XMLFilter();
+    TolFilter           tolfilter          = new TolFilter();
+    NexusFilter         nexusfilter        = new NexusFilter();
+    PdfFilter           pdffilter          = new PdfFilter();
+    GraphicsFileFilter  graphicsfilefilter = new GraphicsFileFilter();
+    MsaFileFilter       msafilter          = new MsaFileFilter();
+    SequencesFileFilter seqsfilter         = new SequencesFileFilter();
+    DefaultFilter       defaultfilter      = new DefaultFilter();
+
+    /**
+     * Action performed.
+     */
+    void actionPerformed( ActionEvent e );
+
+    Configuration getConfiguration();
+
+    /**
+     * This method returns the current external node data which
+     * has been selected by the user by clicking the "Return ..."
+     * menu item. This method is expected to be called from Javascript or
+     * something like it.
+     *
+     * @return current external node data as String
+     */
+    String getCurrentExternalNodesDataBuffer();
+
+    int getCurrentExternalNodesDataBufferChangeCounter();
+
+    int getCurrentExternalNodesDataBufferLength();
+
+    InferenceManager getInferenceManager();
+
+    MainPanel getMainPanel();
+
+    Options getOptions();
+
+    ProcessPool getProcessPool();
+
+    void showTextFrame( String s, String title );
+
+    void showWhole();
+
+    void updateProcessMenu();
+
+    void activateSaveAllIfNeeded();
+}
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