X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2FOptions.java;h=f8aa3769270978ec3191f36e715767cbfe905d28;hb=789f3450d14e1f922072f4288833afab71993667;hp=e90ae2027ba84c51bdfeaf10ecb9c66f19ac4e11;hpb=575173234369a898f321845df1c12b2c83676a4a;p=jalview.git diff --git a/forester/java/src/org/forester/archaeopteryx/Options.java b/forester/java/src/org/forester/archaeopteryx/Options.java index e90ae20..f8aa376 100644 --- a/forester/java/src/org/forester/archaeopteryx/Options.java +++ b/forester/java/src/org/forester/archaeopteryx/Options.java @@ -458,7 +458,7 @@ final public class Options { _number_of_digits_after_comma_for_branch_length_values = Constants.NUMBER_OF_DIGITS_AFTER_COMMA_FOR_BRANCH_LENGTH_VALUES_DEFAULT; _number_of_digits_after_comma_for_confidence_values = Constants.NUMBER_OF_DIGITS_AFTER_COMMA_FOR_CONFIDENCE_VALUES_DEFAULT; _nh_parsing_replace_underscores = false; - _taxonomy_extraction = TAXONOMY_EXTRACTION.PFAM_STYLE_STRICT; + _taxonomy_extraction = TAXONOMY_EXTRACTION.NO; _cladogram_type = Constants.CLADOGRAM_TYPE_DEFAULT; _show_domain_labels = true; setAbbreviateScientificTaxonNames( false );