X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Farchaeopteryx%2Ftools%2FGoAnnotation.java;h=702f30c38e02aa50c63e137e296d7cb0320b8edf;hb=713d694ab9ab4e0701fd756af1ea2a892f96ade9;hp=6ca6a2f1eda073192ed6404777fdd0ded4d9639c;hpb=0f295917c869b17a9322af3e738e3527ba9b31d4;p=jalview.git

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java b/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
index 6ca6a2f..702f30c 100644
--- a/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/GoAnnotation.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 
@@ -43,7 +43,7 @@ import org.forester.phylogeny.data.Sequence;
 import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 import org.forester.util.ForesterUtil;
 
-public class GoAnnotation implements Runnable {
+public class GoAnnotation extends RunnableProcess {
 
     private static final String        SYMBOL   = "Symbol";
     private static final String        ASPECT   = "Aspect";
@@ -62,7 +62,7 @@ public class GoAnnotation implements Runnable {
     }
 
     private void annotate() {
-        _mf.getMainPanel().getCurrentTreePanel().setWaitCursor();
+        start( _mf, "GO annotate" );
         for( final PhylogenyNodeIterator iter = _phy.iteratorPostorder(); iter.hasNext(); ) {
             final PhylogenyNode node = iter.next();
             if ( ( node.getNodeData().getSequences() != null ) && !node.getNodeData().getSequences().isEmpty() ) {
@@ -125,6 +125,7 @@ public class GoAnnotation implements Runnable {
                 }
             }
         }
+        end( _mf );
         _treepanel.repaint();
         _treepanel.setEdited( true );
     }