X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fdevelopment%2FDevelopmentTools.java;h=3cbc3858488ba54e2bb01cf0ffb4848eef97521f;hb=7713a9bc5abcc18bcfeb3b8e4d172edef36b0992;hp=9cb5e77454c491787c4d7373e05460893b10e9c6;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git diff --git a/forester/java/src/org/forester/development/DevelopmentTools.java b/forester/java/src/org/forester/development/DevelopmentTools.java index 9cb5e77..3cbc385 100644 --- a/forester/java/src/org/forester/development/DevelopmentTools.java +++ b/forester/java/src/org/forester/development/DevelopmentTools.java @@ -21,12 +21,13 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.development; import java.util.Random; +import org.forester.io.parsers.phyloxml.PhyloXmlDataFormatException; import org.forester.phylogeny.Phylogeny; import org.forester.phylogeny.PhylogenyMethods; import org.forester.phylogeny.PhylogenyNode; @@ -133,7 +134,12 @@ public final class DevelopmentTools { PhylogenyNode n = t.getFirstExternalNode(); int j = t.getRoot().getNumberOfExternalNodes(); while ( n != null ) { - PhylogenyMethods.setTaxonomyCode( n, j + "" ); + try { + PhylogenyMethods.setTaxonomyCode( n, j + "" ); + } + catch ( final PhyloXmlDataFormatException e ) { + e.printStackTrace(); + } j--; n = n.getNextExternalNode(); } @@ -176,8 +182,13 @@ public final class DevelopmentTools { final Random r = new Random(); PhylogenyNode n = t.getFirstExternalNode(); while ( n != null ) { - final String code = ( ( Math.abs( r.nextInt() ) % ( ma - mi + 1 ) ) + mi ) + ""; - PhylogenyMethods.setTaxonomyCode( n, code ); + final String code = ( ( Math.abs( r.nextInt() ) % ( ( ma - mi ) + 1 ) ) + mi ) + ""; + try { + PhylogenyMethods.setTaxonomyCode( n, code ); + } + catch ( final PhyloXmlDataFormatException e ) { + e.printStackTrace(); + } n = n.getNextExternalNode(); } }