X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fevoinference%2FTestPhylogenyReconstruction.java;h=5b7b99cd321b9b297192c1238a2608312634e857;hb=5bae4861f59350b3158d6ebd5034ea7698d81b98;hp=f1074f46eace55afdeb62bccd00ba8549ffa7866;hpb=03e7c823c2f9f2b9766bf486a164a8eec69d5214;p=jalview.git

diff --git a/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java b/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
index f1074f4..5b7b99c 100644
--- a/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
+++ b/forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java
@@ -437,7 +437,7 @@ public class TestPhylogenyReconstruction {
 
     private static boolean testDistanceCalculationMethods( final File test_dir ) {
         try {
-            final Msa msa0 = GeneralMsaParser.parse( new FileInputStream( test_dir + ForesterUtil.FILE_SEPARATOR
+            final Msa msa0 = GeneralMsaParser.parseMsa( new FileInputStream( test_dir + ForesterUtil.FILE_SEPARATOR
                     + "bcl.aln" ) );
             final BasicSymmetricalDistanceMatrix pwd0 = PairwiseDistanceCalculator.calcKimuraDistances( msa0 );
             if ( pwd0.getSize() != 120 ) {