X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fgo%2FBasicGoSubset.java;h=420f01ba65418cb49cc9f4099fc3c5f01fa200ab;hb=41ea5973f93687513d29e5b7cad1abff8f3adb4b;hp=f1658d78fc7367609af03a15e9b3356ae809594a;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git diff --git a/forester/java/src/org/forester/go/BasicGoSubset.java b/forester/java/src/org/forester/go/BasicGoSubset.java index f1658d7..420f01b 100644 --- a/forester/java/src/org/forester/go/BasicGoSubset.java +++ b/forester/java/src/org/forester/go/BasicGoSubset.java @@ -58,17 +58,8 @@ public class BasicGoSubset implements GoSubset { else if ( my_s.equals( GOSLIM_POMBE_STR ) ) { _type = Type.GOSLIM_POMBE; } - else if ( my_s.equals( HIGH_LEVEL_ANNOTATION_QC_STR ) ) { - _type = Type.HIGH_LEVEL_ANNOTATION_QC; - } - else if ( my_s.equals( UNVETTED_STR ) ) { - _type = Type.UNVETTED; - } - else if ( my_s.equals( MF_NEEDS_REVIEW_STR ) ) { - _type = Type.MF_NEEDS_REVIEW; - } else { - throw new IllegalArgumentException( "unknown GO subset type: " + my_s ); + _type = Type.OTHER; } } @@ -134,17 +125,9 @@ public class BasicGoSubset implements GoSubset { case GOSLIM_POMBE: sb.append( GOSLIM_POMBE_STR ); break; - case MF_NEEDS_REVIEW: - sb.append( MF_NEEDS_REVIEW_STR ); - break; - case HIGH_LEVEL_ANNOTATION_QC: - sb.append( HIGH_LEVEL_ANNOTATION_QC_STR ); - break; - case UNVETTED: - sb.append( UNVETTED_STR ); + case OTHER: + sb.append( "other" ); break; - default: - new AssertionError( "unknown type: " + getType() ); } return sb.toString(); }