X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fgo%2FGoUtils.java;h=fa08ef2b16177d52e5e41998a861d6d1dc49aaee;hb=b71613d9a558ddfaf8f23b33d6a64d8905fd0ac6;hp=39a778f3ca170106252970d07b93a3312cbe7dac;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/go/GoUtils.java b/forester/java/src/org/forester/go/GoUtils.java
index 39a778f..fa08ef2 100644
--- a/forester/java/src/org/forester/go/GoUtils.java
+++ b/forester/java/src/org/forester/go/GoUtils.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 
@@ -50,9 +50,9 @@ public final class GoUtils {
 
     /**
      * This is for counting the how many times each GO term in 'categories'
-     * is a (direct or indirect) super term of the GO terms in 'experiment_set'. 
-     * 
-     * 
+     * is a (direct or indirect) super term of the GO terms in 'experiment_set'.
+     *
+     *
      * @param categories the set of super terms to be counted
      * @param experiment_set the list of GO terms to be analyzed
      * @param all_go_terms all terms in the ontology
@@ -160,7 +160,7 @@ public final class GoUtils {
             penultimate = my_go_term;
             if ( !map.containsKey( my_go_term.getSuperGoIds().get( 0 ) ) ) {
                 throw new IllegalArgumentException( "GO-id [" + my_go_term.getSuperGoIds().get( 0 )
-                        + "] not found in map" );
+                                                    + "] not found in map" );
             }
             my_go_term = map.get( my_go_term.getSuperGoIds().get( 0 ) );
         }
@@ -172,7 +172,7 @@ public final class GoUtils {
         while ( ( my_go_term.getSuperGoIds() != null ) && ( my_go_term.getSuperGoIds().size() > 0 ) ) {
             if ( !map.containsKey( my_go_term.getSuperGoIds().get( 0 ) ) ) {
                 throw new IllegalArgumentException( "GO-id [" + my_go_term.getSuperGoIds().get( 0 )
-                        + "] not found in map" );
+                                                    + "] not found in map" );
             }
             my_go_term = map.get( my_go_term.getSuperGoIds().get( 0 ) );
         }