X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fgo%2FPfamToGoMapping.java;h=7d9056bd730cc44b89dbbcd8b0a3021c3d041c9b;hb=0b39293d1577083551ba528d0ac7afcacbf69dde;hp=27ea75ddfde91b43d0c3ac44c36666088724aef5;hpb=73c5b11c1a00e539afb246e345ebf3f042dded78;p=jalview.git diff --git a/forester/java/src/org/forester/go/PfamToGoMapping.java b/forester/java/src/org/forester/go/PfamToGoMapping.java index 27ea75d..7d9056b 100644 --- a/forester/java/src/org/forester/go/PfamToGoMapping.java +++ b/forester/java/src/org/forester/go/PfamToGoMapping.java @@ -21,18 +21,16 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.go; -import org.forester.protein.DomainId; - public class PfamToGoMapping implements Mapping { - private final DomainId _pfam_domain_id; - private final GoId _go_id; + private final String _pfam_domain_id; + private final GoId _go_id; - public PfamToGoMapping( final DomainId pfam_domain_id, final GoId go_id ) { + public PfamToGoMapping( final String pfam_domain_id, final GoId go_id ) { _pfam_domain_id = pfam_domain_id; _go_id = go_id; } @@ -42,13 +40,13 @@ public class PfamToGoMapping implements Mapping { if ( this == m ) { return 0; } - return getKey().compareTo( ( DomainId ) m.getKey() ); + return getKey().compareTo( ( String ) m.getKey() ); } /** * Based on key and value. - * - * + * + * */ @Override public boolean equals( final Object o ) { @@ -69,7 +67,7 @@ public class PfamToGoMapping implements Mapping { } @Override - public DomainId getKey() { + public String getKey() { return _pfam_domain_id; }